Large-Scale Phylogenomic Analyses Indicate a Deep Origin of Primary Plastids within Cyanobacteria

Signature proteins for the major clades of Cyanobacteria

(2010) Radhey S Gupta et al.   BMC EVOLUTIONARY BIOLOGY

BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments

(2010) Alexis Criscuolo et al.   BMC EVOLUTIONARY BIOLOGY

Genomic Structure of an Economically Important Cyanobacterium, Arthrospira (Spirulina) platensis NIES-39

(2010) T. Fujisawa et al.   DNA RESEARCH

Dating the cyanobacterial ancestor of the chloroplast

(2010) Luisa I Falcón et al.   ISME Journal

Differential Gene Retention in Plastids of Common Recent Origin

(2010) A. Reyes-Prieto et al.   MOLECULAR BIOLOGY AND EVOLUTION

The endosymbiotic origin, diversification and fate of plastids

(2010) P. J. Keeling   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Unicellular Cyanobacterial Distributions Broaden the Oceanic N2 Fixation Domain

(2010) P. H. Moisander et al.   SCIENCE

Broadly Sampled Multigene Analyses Yield a Well-Resolved Eukaryotic Tree of Life

(2010) Laura Wegener Parfrey et al.   SYSTEMATIC BIOLOGY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Computational prediction of cAMP receptor protein (CRP) binding sites in cyanobacterial genomes

(2009) Minli Xu et al.   BMC GENOMICS

Timing of morphological and ecological innovations in the cyanobacteria – a key to understanding the rise in atmospheric oxygen

(2009) C. E. BLANK et al.   Geobiology

Signal Conflicts in the Phylogeny of the Primary Photosynthetic Eukaryotes

(2009) P. Deschamps et al.   MOLECULAR BIOLOGY AND EVOLUTION

Origin of Saxitoxin Biosynthetic Genes in Cyanobacteria

(2009) Ahmed Moustafa et al.   PLoS One

Plastid Evolution

(2008) Sven B. Gould et al.   Annual Review of Plant Biology

Phyutility: a phyloinformatics tool for trees, alignments and molecular data

(2008) S. A. Smith et al.   BIOINFORMATICS

Empirical profile mixture models for phylogenetic reconstruction

(2008) Le Si Quang et al.   BIOINFORMATICS

Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes

(2008) F. Burki et al.   Biology Letters

Comparative Analysis of Fatty Acid Desaturases in Cyanobacterial Genomes

(2008) Xiaoyuan Chi et al.   COMPARATIVE AND FUNCTIONAL GENOMICS

A likelihood look at the supermatrix–supertree controversy

(2008) Fengrong Ren et al.   GENE

Integrating Markov Clustering and Molecular Phylogenetics to Reconstruct the Cyanobacterial Species Tree from Conserved Protein Families

(2008) W. D. Swingley et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genes of Cyanobacterial Origin in Plant Nuclear Genomes Point to a Heterocyst-Forming Plastid Ancestor

(2008) O. Deusch et al.   MOLECULAR BIOLOGY AND EVOLUTION

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenetic mixture models for proteins

(2008) S. Q. Le et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The origin of plastids

(2008) C.J Howe et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genome evolution in cyanobacteria: The stable core and the variable shell

(2008) T. Shi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Testing Congruence in Phylogenomic Analysis

(2008) Jessica W. Leigh et al.   SYSTEMATIC BIOLOGY

Metabolic Symbiosis and the Birth of the Plant Kingdom

(2007) P. Deschamps et al.   MOLECULAR BIOLOGY AND EVOLUTION