A comprehensive epigenome map of Plasmodium falciparum reveals unique mechanisms of transcriptional regulation and identifies H3K36me2 as a global mark of gene suppression

Antisense long noncoding RNAs regulatevargene activation in the malaria parasitePlasmodium falciparum

(2015) Inbar Amit-Avraham et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multiple dimensions of epigenetic gene regulation in the malaria parasite Plasmodium falciparum

(2014) Ferhat Ay et al.   BIOESSAYS

Genome-wide analysis in Plasmodium falciparum reveals early and late phases of RNA polymerase II occupancy during the infectious cycle

(2014) Ragini Rai et al.   BMC GENOMICS

Strand-specific RNA-Seq reveals widespread and developmentally regulated transcription of natural antisense transcripts in Plasmodium falciparum

(2014) T Siegel et al.   BMC GENOMICS

Recognizing methylated histone variant H3.3 to prevent tumors

(2014) Swaminathan Venkatesh et al.   CELL RESEARCH

Noncoding RNAs as emerging regulators of Plasmodium falciparum virulence gene expression

(2014) Shruthi S Vembar et al.   CURRENT OPINION IN MICROBIOLOGY

Exonuclease-mediated degradation of nascent RNA silences genes linked to severe malaria

(2014) Qingfeng Zhang et al.   NATURE

DB-AT: a 2015 update to the Full-parasites database brings a multitude of new transcriptomic data for apicomplexan parasites

(2014) Marcin Jąkalski et al.   NUCLEIC ACIDS RESEARCH

Recruitment of PfSET2 by RNA Polymerase II to Variant Antigen Encoding Loci Contributes to Antigenic Variation in P. falciparum

(2014) Uchechi E. Ukaegbu et al.   PLoS Pathogens

Silence, activate, poise and switch! Mechanisms of antigenic variation inPlasmodium falciparum

(2013) Julien Guizetti et al.   CELLULAR MICROBIOLOGY

H2A.Z/H2B.Z double-variant nucleosomes inhabit the AT-rich promoter regions of thePlasmodium falciparumgenome

(2013) Wieteke A. M. Hoeijmakers et al.   MOLECULAR MICROBIOLOGY

PfSETvs methylation of histone H3K36 represses virulence genes in Plasmodium falciparum

(2013) Lubin Jiang et al.   NATURE

H3K9 and H3K14 acetylation co-occur at many gene regulatory elements, while H3K14ac marks a subset of inactive inducible promoters in mouse embryonic stem cells

(2012) Krishanpal Karmodiya et al.   BMC GENOMICS

PfSET10, a Plasmodium falciparum Methyltransferase, Maintains the Active var Gene in a Poised State during Parasite Division

(2012) Jennifer C. Volz et al.   Cell Host & Microbe

H2A.Z Facilitates Access of Active and Repressive Complexes to Chromatin in Embryonic Stem Cell Self-Renewal and Differentiation

(2012) Gangqing Hu et al.   Cell Stem Cell

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Understanding the language of Lys36 methylation at histone H3

(2012) Eric J. Wagner et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Insulator-like pairing elements regulate silencing and mutually exclusive expression in the malaria parasite Plasmodium falciparum

(2012) I. Avraham et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chromatin modifications, epigenetics, and how protozoan parasites regulate their lives

(2012) Matthew M. Croken et al.   TRENDS IN PARASITOLOGY

H3K4 tri-methylation provides an epigenetic signature of active enhancers

(2011) Aleksandra Pekowska et al.   EMBO JOURNAL

Mitosis in the Human Malaria Parasite Plasmodium falciparum

(2011) Noel Gerald et al.   EUKARYOTIC CELL

Emerging Functions of Transcription Factors in Malaria Parasite

(2011) Renu Tuteja et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY

SAGA and ATAC Histone Acetyl Transferase Complexes Regulate Distinct Sets of Genes and ATAC Defines a Class of p300-Independent Enhancers

(2011) Arnaud R. Krebs et al.   MOLECULAR CELL

Linear amplification for deep sequencing

(2011) Wieteke A M Hoeijmakers et al.   Nature Protocols

Histone Crosstalk Directed by H2B Ubiquitination Is Required for Chromatin Boundary Integrity

(2011) Meiji Kit-Wan Ma et al.   PLoS Genetics

Expression of P. falciparum var Genes Involves Exchange of the Histone Variant H2A.Z at the Promoter

(2011) Michaela Petter et al.   PLoS Pathogens

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Epigenetics in Plasmodium: What Do We Really Know? : Fig. 1.

(2010) Catherine J. Merrick et al.   EUKARYOTIC CELL

seqMINER: an integrated ChIP-seq data interpretation platform

(2010) Tao Ye et al.   NUCLEIC ACIDS RESEARCH

H2A.Z Demarcates Intergenic Regions of the Plasmodium falciparum Epigenome That Are Dynamically Marked by H3K9ac and H3K4me3

(2010) Richárd Bártfai et al.   PLoS Pathogens

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Stage-specific susceptibility of human erythroblasts to Plasmodium falciparum malaria infection

(2009) P. A. Tamez et al.   BLOOD

Global Histone Analysis by Mass Spectrometry Reveals a High Content of Acetylated Lysine Residues in the Malaria ParasitePlasmodium falciparum

(2009) Morten B. Trelle et al.   JOURNAL OF PROTEOME RESEARCH

Processing the H3K36me3 signature

(2009) Robert J Sims III et al.   NATURE GENETICS

Synchronous culture of Plasmodium falciparum at high parasitemia levels

(2009) Azar Radfar et al.   Nature Protocols

Dynamic histone H3 epigenome marking during the intraerythrocytic cycle of Plasmodium falciparum

(2009) A. M. Salcedo-Amaya et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sir2 Paralogues Cooperate to Regulate Virulence Genes and Antigenic Variation in Plasmodium falciparum

(2009) Christopher J Tonkin et al.   PLOS BIOLOGY

Plasmodium falciparum Heterochromatin Protein 1 Marks Genomic Loci Linked to Phenotypic Variation of Exported Virulence Factors

(2009) Christian Flueck et al.   PLoS Pathogens

MADIBA: A web server toolkit for biological interpretation of Plasmodium and plant gene clusters

(2008) Philip J Law et al.   BMC GENOMICS

Chromatin associated sense and antisense noncoding RNAs are transcribed from the var gene family of virulence genes of the malaria parasite Plasmodium falciparum

(2008) C. Epp et al.   RNA