Article
Biochemistry & Molecular Biology
Orsolya Bilkei-Gorzo, Tiaan Heunis, Jose Luis Marin-Rubio, Francesca Romana Cianfanelli, Benjamin Bernard Armando Raymond, Joseph Inns, Daniela Fabrikova, Julien Peltier, Fiona Oakley, Ralf Schmid, Anetta Hartlova, Matthias Trost
Summary: This study reveals the importance of phagosomal ubiquitylation and the E3 ubiquitin ligase RNF115 in regulating innate immune functions during bacterial infections.
Article
Biochemistry & Molecular Biology
Linli Ding, Yi Luo, Tian Tian, Xu Chen, Yulan Yang, Min Bu, Jinhua Han, Bing Yang, Haiyan Yan, Ting Liu, Mengjie Wu, Guofei Zhang, Yipeng Xu, Shaoxing Zhu, Michael S. Y. Huen, Genxiang Mao, Jun Huang
Summary: This study uncovers a previously unidentified regulatory mechanism that regulates TOP2A activities at stalled forks and the extent of fork reversal.
NUCLEIC ACIDS RESEARCH
(2022)
Article
Chemistry, Medicinal
Adam G. Bond, Conner Craigon, Kwok-Ho Chan, Andrea Testa, Athanasios Karapetsas, Rotimi Fasimoye, Thomas Macartney, J. Julian Blow, Dario R. Alessi, Alessio Ciulli
Summary: This study describes the design and development of a new protein degradation system utilizing a variant of the Brd4 bromodomain as a degradation tag. The system effectively degrades BromoTagged proteins in a fast, selective manner, showing favorable pharmacokinetic profile in mice. This system expands the arsenal of chemical genetic degradation tools for manipulating protein levels and exploring therapeutic potential in cells and in vivo.
JOURNAL OF MEDICINAL CHEMISTRY
(2021)
Article
Cell Biology
Martin P. Schwalm, Lena M. Berger, Maximilian N. Meuter, James D. Vasta, Cesear R. Corona, Sandra Roehm, Benedict-Tilman Berger, Frederic Farges, Sebastian M. Beinert, Franziska Preuss, Viktoria Morasch, Vladimir V. Rogov, Sebastian Mathea, Krishna Saxena, Matthew B. Robers, Susanne Mueller, Stefan Knapp
Summary: E3 ligases play a crucial role in regulating protein homeostasis by recruiting substrate proteins to the proteasomal degradation machinery. Recent research has focused on the Baculovirus IAP Repeat (BIR) family of E3 ligases, which contain a structurally conserved but diverse protein interaction domain. The Inhibitors of Apoptosis (IAP) family, which typically have three BIR domains, are promising drug targets. However, there is currently a lack of assay tools to evaluate the selectivity of inhibitors in this target area.
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY
(2022)
Review
Biochemistry & Molecular Biology
Rui Zhang, Shaoqing Shi
Summary: HECT-type E3 ubiquitin ligases play a vital role in controlling protein function and stability, and members of the NEDD4 family have critical roles in dysregulation of autophagy in cancer cells. This review focuses on the role of NEDD4 E3 ligases in defective autophagy in cancer cells, discussing their function, substrates, and signaling pathways, providing a basis for cancer treatment through modulation of these ligases.
MOLECULAR MEDICINE
(2023)
Review
Immunology
Haoran Cui, Yaxian Zhang, Leiliang Zhang
Summary: Poxviruses have evolved various mechanisms to evade innate immunity, some of which involve poxvirus-encoded E3 ubiquitin ligases and adaptor proteins. These proteins can be categorized into five groups based on their functional domains and ubiquitin transfer mechanisms. Most known substrates of poxvirus E3 ubiquitin ligases are components of the innate immune system. Current research progress provides mechanistic insights into the interaction between these viruses and their hosts.
FRONTIERS IN IMMUNOLOGY
(2021)
Article
Plant Sciences
Jialing Zhang, Chaonan Li, Long Li, Yajun Xi, Jingyi Wang, Xinguo Mao, Ruilian Jing
Summary: TaAIRP2-1B regulates spike length by facilitating TaHIPP3 degradation, and the haplotype Hap-1B-1 of TaAIRP2-1B is a favorable natural variation for increasing spike length in wheat. This study provides insights into the role of E3 ubiquitin ligase genes in wheat development and identifies TaAIRP2-1B as a key regulator of spike length. The findings also offer genetic resources and markers for wheat molecular breeding.
JOURNAL OF EXPERIMENTAL BOTANY
(2023)
Review
Biochemistry & Molecular Biology
Ishita Tripathi-Giesgen, Christian Behrends, Arno F. Alpi
Summary: The ubiquitin system plays a crucial role in the host cellular defense program against bacterial infection, especially when certain bacteria are exposed to the host cytosol during invasion. Host cell E3 ubiquitin ligases contribute to the formation of a protective ubiquitin coat on invading pathogens, with their divergent ubiquitin conjugation mechanisms influencing the complexity of the anti-bacterial coating. Bacteria have evolved strategies to evade the activities of the host ubiquitin system.
Review
Biochemistry & Molecular Biology
Dong Wang, Yuanming Zou, Xinyue Huang, Zeyu Yin, Mohan Li, Jiaqi Xu, Boquan Wu, Da Li, Ying Zhang, Yingxian Sun, Xingang Zhang, Naijin Zhang
Summary: The ubiquitin-proteasome system is crucial for regulating protein levels in cells, and SMURF1 and SMURF2 are important components that maintain physiological processes by regulating the stability of multiple proteins. The regulatory functions of SMURFs in disease progression are complex, either facilitative or inhibitory, and understanding their mechanisms offers potential therapeutic targets and new avenues for research.
Review
Biochemistry & Molecular Biology
Dong Wang, Yuanming Zou, Xinyue Huang, Zeyu Yin, Mohan Li, Jiaqi Xu, Boquan Wu, Da Li, Ying Zhang, Yingxian Sun, Xingang Zhang, Naijin Zhang
Summary: The ubiquitin-proteasome system plays a crucial role in regulating protein levels in cells. SMURF1 and SMURF2 are key components in this system, responsible for regulating protein stability and maintaining physiological processes such as cell migration, proliferation, and apoptosis. They also play significant roles in disease progression, with complex regulatory functions. This review focuses on the mechanisms by which SMURF1 and SMURF2 regulate disease progression in non-cancerous diseases, providing potential therapeutic targets for various diseases and new research avenues for SMURF proteins.
Article
Biochemistry & Molecular Biology
Yi Zheng, Jian Deng, Lulu Han, Meng-Wei Zhuang, Yanwen Xu, Jing Zhang, Mei-Ling Nan, Yang Xiao, Peng Zhan, Xinyong Liu, Chengjiang Gao, Pei-Hui Wang
Summary: This study reveals the involvement of the stress response pathway and innate antiviral immunity in the pathogenic mechanism of SARS-CoV-2. NSP5 and N protein of SARS-CoV-2 were found to attenuate the formation of antiviral stress granules (avSG). NSP5 suppressed avSG formation and disrupted the RIG-I-MAVS complex to weaken the RIG-I-mediated antiviral response, while N protein specifically targeted cofactors upstream of RIG-I and affected the recognition of dsRNA by RIG-I.
SIGNAL TRANSDUCTION AND TARGETED THERAPY
(2022)
Article
Biochemistry & Molecular Biology
Qian Lv, Liqun Li, Ying Meng, Huimin Sun, Liuping Chen, Bingxin Wang, Xuejun Li
Summary: The study revealed that TaGW2-6A interacts with TaAGPS and degrades TaAGPS through the 26S proteasome pathway, influencing seed size. This mechanism provides new insights into the formation of wheat grain weight.
Review
Cell Biology
Hugh C. Osborne, Elsa Irving, Josep V. Forment, Christine K. Schmidt
Summary: Ubiquitin and ubiquitin-like proteins play critical roles in maintaining genome stability, with E2 enzymes responsible for transferring these proteins to substrate proteins. Recent studies have shown that E2 enzymes can control chain topology and substrate-site specificity, making them potential targets for developing novel anti-cancer therapies.
TRENDS IN CELL BIOLOGY
(2021)
Article
Multidisciplinary Sciences
Xiaolan Liu, Xufeng Cen, Ronghai Wu, Ziyan Chen, Yanqi Xie, Fengqi Wang, Bing Shan, Linghui Zeng, Jichun Zhou, Bojian Xie, Yangjun Cai, Jinyan Huang, Yingjiqiong Liang, Youqian Wu, Chao Zhang, Dongrui Wang, Hongguang Xia
Summary: This study reveals that cisplatin enhances the anti-tumor effect of PD-L1 blockade and upregulates ARIH1 expression, promoting T cell infiltration and sensitizing tumors to immune checkpoint blockade. ARIH1 mediates activation of the STING pathway by ubiquitination and degradation of DNA-PKcs, which is a mechanism of tumor resistance to ICB. Activating ARIH1 is an effective strategy to improve the efficacy of cancer immunotherapy.
NATURE COMMUNICATIONS
(2023)
Review
Immunology
Yiyang Liu, Lu Jiang, Xuemeng Sun, Yixuan Song, Yihan Liu, Leiliang Zhang
Summary: TRIM7 plays significant roles in host defense against viral infections and immune signaling pathways. However, viruses have developed immune evasion mechanisms to counteract its function. Understanding the interaction between TRIM7 and antiviral immunity is crucial for developing innovative treatments for viral diseases.
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY
(2023)
Article
Oncology
Amiskwia Poschel, Erin Beebe, Laura Kunz, Parisa Amini, Franco Guscetti, Alexandra Malbon, Enni Markkanen
Summary: The study analyzed proteomic changes in cancer-associated stroma (CAS) compared to normal stroma in canine mammary carcinoma (mCA), finding clear differences in protein abundance related to extracellular matrix, cytoskeleton, and cytokines. The analysis also validated transcriptomic upregulation of certain genes in CAS on the protein level and demonstrated their adverse prognostic value for human breast cancer. These findings highlight the relevance of canine mCA as a model for human disease and suggest potential implications for breast cancer treatment in both species.
Review
Biochemistry & Molecular Biology
Maria Rita Fabbrizi, Jason L. Parsons
Summary: This article provides an up-to-date review on the radiobiological effects of RT in HNSCC cell models, focusing on specific cell death mechanisms, and details some of the current therapeutic strategies to enhance the radiosensitivity of HNSCC cells.
EXPERT REVIEWS IN MOLECULAR MEDICINE
(2022)
Article
Biology
Flavia S. Mueller, Rene Amport, Tina Notter, Sina M. Schalbetter, Han-Yu Lin, Zuzana Garajova, Parisa Amini, Ulrike Weber-Stadlbauer, Enni Markkanen
Summary: This study found a link between deficient DNA repair leading to unrepaired DNA damage in the forebrain and the development of neuropsychiatric disorders. The effects of this DNA damage on anxiety-like behaviors were found to be sex-dependent, and alterations to the GABAergic neurotransmitter system may contribute to this effect.
Article
Dermatology
Erin Beebe, Zahra Motamed, Lennart Opitz, Phil F. Cheng, Mitchell P. Levesque, Enni Markkanen, Laurence Feldmeyer
Summary: This study analyzes the molecular landscape of cancer-associated stroma (CAS) in cutaneous squamous cell carcinoma (cSCC) and identifies changes in immune cells and the influence of perineural infiltration (PNI) on CAS. The results demonstrate immune exhaustion markers in CAS of cSCC and an increase in IL-17A with PNI. These findings support further research on immunotherapy and anti-IL-17A in cSCC, particularly for cases with PNI.
JOURNAL OF INVESTIGATIVE DERMATOLOGY
(2022)
Article
Biochemistry & Molecular Biology
Sifaddin M. R. Konis, Jonathan R. Hughes, Jason L. Parsons
Summary: TRIM26 plays a central role in determining the response to different forms of oxidative stress by regulating DNA glycosylase levels required for an efficient base excision repair (BER) response.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Review
Oncology
Rhianna M. Hill, Sonia Rocha, Jason L. Parsons
Summary: Hypoxia, a common phenomenon in tumors, leads to increased resistance to radiotherapy and poor prognosis for patients. Overcoming hypoxia within tumors by developing new therapeutic techniques in combination with radiotherapy is crucial for improving patient survival. This review provides an up-to-date overview of how hypoxia contributes to radioresistance in head and neck cancer and discusses strategies to overcome this challenge.
Article
Agriculture, Dairy & Animal Science
L. Bittner-Schwerda, E. Malama, M. Siuda, B. van Loon, H. Bollwein
Summary: This study investigated the effects of hydrogen peroxide (H2O2) on the chromatin structure of sperm. The results showed that H2O2 adversely affected the sperm's motility, plasma membrane and acrosome integrity, but had a minor impact on chromatin structure. The addition of catalase reversed the chromatin damage caused by H2O2.
ANIMAL REPRODUCTION SCIENCE
(2022)
Article
Oncology
Massimiliano Mellone, Klaudia Piotrowska, Giulia Venturi, Lija James, Aleksandra Bzura, Maria A. Lopez, Sonya James, Chuan Wang, Matthew J. Ellis, Christopher J. Hanley, Josephine F. Buckingham, Kerry L. Cox, Gareth Hughes, Viia Valge-Archer, Emma King, Stephen A. Beers, Vincent Jaquet, George D. D. Jones, Natalia Savelyeva, Emre Sayan, Jason L. Parsons, Stephen Durant, Gareth J. Thomas
Summary: Myofibroblastic cancer-associated fibroblast (myoCAF)-rich tumors have low T cell infiltration and poor response to immune-checkpoint blockade. This study identifies ATM as a central regulator of myoCAF differentiation, providing a potential therapeutic target for overcoming immunotherapy resistance in myoCAF-rich tumors.
Article
Biochemistry & Molecular Biology
Sunbok Jang, Namrata Kumar, Mathew A. Schaich, Zhou Zhong, Barbara van Loon, Simon C. Watkins, Bennett Van Houten
Summary: This study discovered that UV-DDB has specific recognition for N-6-ethenoadenine and hypoxanthine, besides oxidized bases, and it stimulates AAG activity and helps with the release of AAG from abasic sites, facilitating the repair process.
NUCLEIC ACIDS RESEARCH
(2022)
Article
Oncology
Erin Beebe, Amiskwia Poeschel, Laura Kunz, Witold Wolski, Zahra Motamed, Daniela Meier, Franco Guscetti, Mirja C. Nolff, Enni Markkanen
Summary: It has been discovered that there is significant molecular homology between canine fibrosarcoma (FSA) and human soft-tissue sarcomas, highlighting the importance of studying canine FSA as a model for the human disease.
Article
Oncology
Ishani Banik, Adhideb Ghosh, Erin Beebe, Blaz Burja, Mojca Frank Bertoncelj, Christopher M. M. Dooley, Enni Markkanen, Reinhard Dummer, Elisabeth M. M. Busch-Nentwich, Mitchell P. P. Levesque
Summary: NRAS mutations are common in melanoma but lack targeted therapies. This study demonstrates that p38 acts as a tumor suppressor in NRAS mutant melanoma by regulating mTOR phosphorylation, autophagy, and actin remodeling. Pharmacologically available small molecules can modulate p38 and its downstream targets, providing a potential strategy for treating NRAS mutant melanoma. Combining these compounds with FDA-approved drugs like MEK inhibitors may offer a novel approach for targeting NRAS-mutant melanoma.
Review
Biochemistry & Molecular Biology
Beth Wilkinson, Mark A. A. Hill, Jason L. L. Parsons
Summary: Radiotherapy using ionising radiation is a common treatment for many cancers, as it damages the DNA of cancer cells. Complex DNA damage (CDD), which is difficult to repair, is a key contributor to the cell-killing effects of radiotherapy. The level and complexity of CDD increase with higher ionisation density of the radiation. Detecting and measuring IR-induced CDD in cells and tissues poses challenges, and there are uncertainties regarding the specific DNA repair mechanisms involved. However, advancements are being made in these areas to improve understanding of cellular responses to CDD and explore targeted therapies.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2023)
Review
Biochemistry & Molecular Biology
Emma Melia, Jason L. Parsons
Summary: Radiotherapy is an important treatment for cancer, and particle radiotherapy offers advantages over conventional photons. Proton beam therapy and carbon ion radiotherapy can precisely target tumors and generate enhanced therapeutic responses. DNA damage plays a key role in tumor cell killing, and the complexity of DNA damage increases with radiation intensity. Understanding the DNA repair pathways activated by different radiation sources is crucial for improving the efficacy of radiotherapy.
BIOSCIENCE REPORTS
(2023)
Article
Oncology
Julia Ettlin, Alina Bauer, Lennart Opitz, Alexandra Malbon, Enni Markkanen
Summary: Cancer-associated stroma (CAS) plays a crucial role in the development and progression of epithelial tumors, including breast cancer. By analyzing RNA-sequencing data from canine mammary tumors, researchers identified differentially expressed genes related to CAS between metastatic and non-metastatic tumors, with implications for pathways such as chemotaxis, apoptosis regulation, immune response, and TGF-beta signaling.
JOURNAL OF MAMMARY GLAND BIOLOGY AND NEOPLASIA
(2023)
Article
Biology
Elena Clementi, Zuzana Garajova, Enni Markkanen
Summary: Maintenance of DNA integrity is crucial for cells to prevent diseases, and cells have evolved various DNA repair mechanisms to safeguard genetic integrity. The comet assay is a widely used method for measuring both DNA damage and its repair in cells, providing a valuable tool for assessing genotoxicity and repair kinetics.