Comparison of transcriptomic landscapes of different lamb muscles using RNA-Seq.

Comparative transcriptome profiling of longissimus muscle tissues from Qianhua Mutton Merino and Small Tail Han sheep

(2016) Limin Sun et al.   Scientific Reports

Diminishing returns in next-generation sequencing (NGS) transcriptome data

(2015) Rex Lei et al.   GENE

Phosphorylation of myofibrillar proteins in post-mortem ovine muscle with different tenderness

(2015) Lijuan Chen et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Histochemical fiber types in 16 heavy-lamb skeletal muscles

(2015) Javier Ithurralde et al.   SMALL RUMINANT RESEARCH

Identification and Analysis of Genetic Variations in Pri-MiRNAs Expressed Specifically or at a High Level in Sheep Skeletal Muscle

(2015) Wei Zhang et al.   PLoS One

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Maternal nutrition induces gene expression changes in fetal muscle and adipose tissues in sheep

(2014) Francisco Peñagaricano et al.   BMC GENOMICS

Desmin in muscle and associated diseases: beyond the structural function

(2014) Karim Hnia et al.   CELL AND TISSUE RESEARCH

Polymorphisms in twelve candidate genes are associated with growth, muscle lipid profile and meat quality traits in eleven European cattle breeds

(2014) N. Sevane et al.   MOLECULAR BIOLOGY REPORTS

Analysis of Differential Gene Expression and Novel Transcript Units of Ovine Muscle Transcriptomes

(2014) Chunlan Zhang et al.   PLoS One

RNA-seq differential expression studies: more sequence or more replication?

(2013) Yuwen Liu et al.   BIOINFORMATICS

Reference Gene Selection for Quantitative PCR Studies in Sheep Neutrophils

(2013) William Vorachek et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Associations between muscle gene expression pattern and technological and sensory meat traits highlight new biomarkers for pork quality assessment

(2013) Marie Damon et al.   MEAT SCIENCE

An independent validation association study of carcass quality, shear force, intramuscular fat percentage and omega-3 polyunsaturated fatty acid content with gene markers in Australian lamb

(2013) Matthew I. Knight et al.   MEAT SCIENCE

Effect of Maternal Methionine Supplementation on the Transcriptome of Bovine Preimplantation Embryos

(2013) Francisco Peñagaricano et al.   PLoS One

Characterization and Comparative Analyses of Muscle Transcriptomes in Dorper and Small-Tailed Han Sheep Using RNA-Seq Technique

(2013) Chunlan Zhang et al.   PLoS One

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Opportunities for predicting and manipulating beef quality

(2012) Jean-François Hocquette et al.   MEAT SCIENCE

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Carbohydrate-binding motif in chitinase 3-like 1 (CHI3L1/YKL-40) specifically activates Akt signaling pathway in colonic epithelial cells

(2011) Chun-Chuan Chen et al.   CLINICAL IMMUNOLOGY

Leiomodin 1, a New Serum Response Factor-dependent Target Gene Expressed Preferentially in Differentiated Smooth Muscle Cells

(2011) Vivek Nanda et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Phosphorylation of human calsequestrin: implications for calcium regulation

(2011) Emiliano J. Sanchez et al.   MOLECULAR AND CELLULAR BIOCHEMISTRY

Fiber Types in Mammalian Skeletal Muscles

(2011) Stefano Schiaffino et al.   PHYSIOLOGICAL REVIEWS

Positional Cloning of a Type 2 Diabetes Quantitative Trait Locus; Tomosyn-2, a Negative Regulator of Insulin Secretion

(2011) Sushant Bhatnagar et al.   PLoS Genetics

Estrogen-related Receptor γ Is a Key Regulator of Muscle Mitochondrial Activity and Oxidative Capacity

(2010) Shamina M. Rangwala et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Cardiac Deletion of Smyd2 Is Dispensable for Mouse Heart Development

(2010) Florian Diehl et al.   PLoS One

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Sim1 and Sim2 expression during chick and mouse limb development

(2009) Pascal Coumailleau et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Effect of DLK1 and RTL1 but Not MEG3 or MEG8 on Muscle Gene Expression in Callipyge Lambs

(2009) Jolena N. Fleming-Waddell et al.   PLoS One