Insight into cordycepin biosynthesis of Cordyceps militaris: Comparison between a liquid surface culture and a submerged culture through transcriptomic analysis

Improved cordycepin production in a liquid surface culture of Cordyceps militaris isolated from wild strain

(2016) Nurmila Sari et al.   BIOTECHNOLOGY AND BIOPROCESS ENGINEERING

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

(2016) Minoru Kanehisa et al.   JOURNAL OF MOLECULAR BIOLOGY

The blue-light receptor CmWC-1 mediates fruit body development and secondary metabolism in Cordyceps militaris

(2015) Tao Yang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Tracking the best reference genes for RT-qPCR data normalization in filamentous fungi

(2015) Agustina Llanos et al.   BMC GENOMICS

Insights into the cellular responses to hypoxia in filamentous fungi

(2015) Falk Hillmann et al.   CURRENT GENETICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Efficient production of cordycepin by the Cordyceps militaris mutant G81-3 for practical use

(2013) Mina Masuda et al.   PROCESS BIOCHEMISTRY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Genome-Wide Transcriptome and Proteome Analysis on Different Developmental Stages of Cordyceps militaris

(2012) Yalin Yin et al.   PLoS One

Iron – A Key Nexus in the Virulence of Aspergillus fumigatus

(2012) Hubertus Haas   Frontiers in Microbiology

Coordination of hypoxia adaptation and iron homeostasis in human pathogenic fungi

(2012) Dawoon Chung et al.   Frontiers in Microbiology

Enhancement of cordycepin production in submerged cultures of Cordyceps militaris by addition of ferrous sulfate

(2011) Dan-dan Fan et al.   BIOCHEMICAL ENGINEERING JOURNAL

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

WebMGA: a customizable web server for fast metagenomic sequence analysis

(2011) Sitao Wu et al.   BMC GENOMICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

Genome sequence of the insect pathogenic fungus Cordyceps militaris, a valued traditional chinese medicine

(2011) Peng Zheng et al.   GENOME BIOLOGY

Nucleotide divergence vs. gene expression differentiation: comparative transcriptome sequencing in natural isolates from the carrion crow and its hybrid zone with the hooded crow

(2010) JOCHEN B. W. WOLF et al.   MOLECULAR ECOLOGY

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Response to Hypoxia, Reduction of Electron Acceptors, and Subsequent Survival by Filamentous Fungi

(2009) Naoki TAKAYA   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Column chromatographic extraction and preparation of cordycepin from Cordyceps militaris waster medium

(2009) He Ni et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

A new approach for improving cordycepin productivity in surface liquid culture ofCordyceps militarisusing high-energy ion beam irradiation

(2008) S.K. Das et al.   LETTERS IN APPLIED MICROBIOLOGY

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing

(2008) J. CRISTOBAL VERA et al.   MOLECULAR ECOLOGY

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS