Tracking the best reference genes for RT-qPCR data normalization in filamentous fungi

Four GH11 xylanases from the xylanolytic fungus Talaromyces versatilis act differently on (arabino)xylans

(2014) Mickael Lafond et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Validation of reference genes in Penicillium echinulatum to enable gene expression study using real-time quantitative RT-PCR

(2014) Denise Zampieri et al.   CURRENT GENETICS

Trancriptional landscape of Aspergillus niger at breaking of conidial dormancy revealed by RNA-sequencing

(2013) Michaela Novodvorska et al.   BMC GENOMICS

Genome-wide transcriptional response of Trichoderma reesei to lignocellulose using RNA sequencing and comparison with Aspergillus niger

(2013) Laure Ries et al.   BMC GENOMICS

Transcriptomic profiling of Aspergillus flavus in response to 5-azacytidine

(2013) Jian-Qing Lin et al.   FUNGAL GENETICS AND BIOLOGY

Influence of temperature and substrate conditions on the omt-1 gene expression of Aspergillus parasiticus in relation to its aflatoxin production

(2013) Daniel Lozano-Ojalvo et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Reference genes in real-time PCR

(2013) Bartłomiej Kozera et al.   JOURNAL OF APPLIED GENETICS

Strategies for mining fungal natural products

(2013) Philipp Wiemann et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Evaluation of potential reference genes for use in gene expression studies in the conifer pathogen (Heterobasidion annosum)

(2013) Tommaso Raffaello et al.   MOLECULAR BIOLOGY REPORTS

Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis

(2013) E. Tisserant et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mosaic genome structure of the barley powdery mildew pathogen and conservation of transcriptional programs in divergent hosts

(2013) S. Hacquard et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cells in cells: morphogenetic and metabolic strategies conditioning rice infection by the blast fungus Magnaporthe oryzae

(2013) Jessie Fernandez et al.   PROTOPLASMA

Germination of conidia of Aspergillus niger is accompanied by major changes in RNA profiles

(2013) M.R. van Leeuwen et al.   STUDIES IN MYCOLOGY

The evolution and pathogenic mechanisms of the rice sheath blight pathogen

(2013) Aiping Zheng et al.   Nature Communications

The Genome and Development-Dependent Transcriptomes of Pyronema confluens: A Window into Fungal Evolution

(2013) Stefanie Traeger et al.   PLoS Genetics

Analysis of a conserved cellulase transcriptional regulator reveals inducer-independent production of cellulolytic enzymes inNeurospora crassa

(2013) Samuel T. Coradetti et al.   MicrobiologyOpen

Gene Expression Analysis of Copper Tolerance and Wood Decay in the Brown Rot Fungus Fibroporia radiculosa

(2012) Juliet D. Tang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Combining laser microdissection and RNA-seq to chart the transcriptional landscape of fungal development

(2012) Ines Teichert et al.   BMC GENOMICS

A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers

(2012) Michael Quail et al.   BMC GENOMICS

RNA quality assessment: a view from plant qPCR studies

(2012) J. V. Die et al.   JOURNAL OF EXPERIMENTAL BOTANY

Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses

(2012) Richard J O'Connell et al.   NATURE GENETICS

Correction of RT–qPCR data for genomic DNA-derived signals with ValidPrime

(2012) Henrik Laurell et al.   NUCLEIC ACIDS RESEARCH

NCBI GEO: archive for functional genomics data sets—update

(2012) Tanya Barrett et al.   NUCLEIC ACIDS RESEARCH

Evaluation of Potential Reference Genes for Quantitative RT-PCR Analysis in Fusarium graminearum under Different Culture Conditions

(2012) Hee-Kyoung Kim et al.   Plant Pathology Journal

Conserved and essential transcription factors for cellulase gene expression in ascomycete fungi

(2012) S. T. Coradetti et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Induction of lignocellulose-degrading enzymes in Neurospora crassa by cellodextrins

(2012) E. A. Znameroski et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

(2012) D. Floudas et al.   SCIENCE

SAGA Complex Components and Acetate Repression in Aspergillus nidulans

(2012) Paraskevi Georgakopoulos et al.   G3-Genes Genomes Genetics

Principles of Carbon Catabolite Repression in the Rice Blast Fungus: Tps1, Nmr1-3, and a MATE–Family Pump Regulate Glucose Metabolism during Infection

(2012) Jessie Fernandez et al.   PLoS Genetics

Uncovering the Genome-Wide Transcriptional Responses of the Filamentous Fungus Aspergillus niger to Lignocellulose Using RNA Sequencing

(2012) Stéphane Delmas et al.   PLoS Genetics

Genome-wide Transcriptional Profiling of Appressorium Development by the Rice Blast Fungus Magnaporthe oryzae

(2012) Darren M. Soanes et al.   PLoS Pathogens

Standardisation and reporting for nucleic acid quantification

(2011) Jim Huggett et al.   ACCREDITATION AND QUALITY ASSURANCE

The Fungi: 1, 2, 3 … 5.1 million species?

(2011) Meredith Blackwell   AMERICAN JOURNAL OF BOTANY

Selection of optimal reference genes for expression analysis in the entomopathogenic fungus Beauveria bassiana during development, under changing nutrient conditions, and after exposure to abiotic stresses

(2011) Yong-Hong Zhou et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Evaluation of external RNA controls for the standardisation of gene expression biomarker measurements

(2011) Alison S Devonshire et al.   BMC GENOMICS

RefGenes: identification of reliable and condition specific reference genes for RT-qPCR data normalization

(2011) Tomas Hruz et al.   BMC GENOMICS

Pathogenomics of fungal plant parasites: what have we learnt about pathogenesis?

(2011) Sarah Maria Schmidt et al.   CURRENT OPINION IN PLANT BIOLOGY

Tight control of mycotoxin biosynthesis gene expression in Aspergillus flavus by temperature as revealed by RNA-Seq

(2011) Jiujiang Yu et al.   FEMS MICROBIOLOGY LETTERS

Validation of RT-qPCR reference genes for in planta expression studies in Hemileia vastatrix, the causal agent of coffee leaf rust

(2011) Ana Vieira et al.   Fungal Biology

The impact of next-generation sequencing on genomics

(2011) Jun Zhang et al.   Journal of Genetics and Genomics

Measurable impact of RNA quality on gene expression results from quantitative PCR

(2011) Joëlle Vermeulen et al.   NUCLEIC ACIDS RESEARCH

Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations

(2011) Thierry Rouxel et al.   Nature Communications

Characterization of the family GH54 α-l-arabinofuranosidases in Penicillium funiculosum, including a novel protein bearing a cellulose-binding domain

(2010) Olivier Guais et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Fungal secondary metabolites – Strategies to activate silent gene clusters

(2010) Axel A. Brakhage et al.   FUNGAL GENETICS AND BIOLOGY

Analysis of wide-domain transcriptional regulation in solid-state cultures of Aspergillus oryzae

(2010) Shauna M. McKelvey et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Molecular detection and characterisation of fungal heat shock protein 60

(2010) Reinhard B. Raggam et al.   MYCOSES

Survey of the transcriptome of Aspergillus oryzae via massively parallel mRNA sequencing

(2010) Bin Wang et al.   NUCLEIC ACIDS RESEARCH

Validation of Melampsora larici-populina reference genes for in planta RT-quantitative PCR expression profiling during time-course infection of poplar leaves

(2010) Stéphane Hacquard et al.   PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY

Mitogen-Activated Protein Kinase hog1 in the Entomopathogenic Fungus Beauveria bassiana Regulates Environmental Stress Responses and Virulence to Insects

(2009) Y. Zhang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A decade of improvements in quantification of gene expression and internal standard selection

(2009) Olivier Thellin et al.   BIOTECHNOLOGY ADVANCES

Validation of reference genes for quantitative expression analysis by real-time RT-PCR in Saccharomyces cerevisiae

(2009) Marie-Ange Teste et al.   BMC MOLECULAR BIOLOGY

The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments

(2009) S. A. Bustin et al.   CLINICAL CHEMISTRY

Pathogenesis of Aspergillus fumigatus in Invasive Aspergillosis

(2009) T. R. T. Dagenais et al.   CLINICAL MICROBIOLOGY REVIEWS

An accurate normalization strategy for RT-qPCR in Hypocrea jecorina (Trichoderma reesei)

(2009) Matthias G. Steiger et al.   JOURNAL OF BIOTECHNOLOGY

How to do successful gene expression analysis using real-time PCR

(2009) Stefaan Derveaux et al.   METHODS

Transcriptomic analysis of the exit from dormancy of Aspergillus fumigatus conidia

(2008) Claude Lamarre et al.   BMC GENOMICS