Comparative cell cycle transcriptomics reveals synchronization of developmental transcription factor networks in cancer cells

A high-resolution transcriptome map of cell cycle reveals novel connections between periodic genes and cancer

(2016) Daniel Dominguez et al.   CELL RESEARCH

Disruption of somitogenesis by a novel dominant allele ofLfngsuggests important roles for protein processing and secretion

(2016) Dustin R. Williams et al.   DEVELOPMENT

SMARCA4/Brg1 coordinates genetic and epigenetic networks underlying Shh-type medulloblastoma development

(2016) X Shi et al.   ONCOGENE

SOX4 Promotes Progression in OLP-Associated Squamous Cell Carcinoma

(2016) Yi Liu et al.   Journal of Cancer

Mapping gene regulatory circuitry of Pax6 during neurogenesis

(2016) Sudhir Thakurela et al.   Cell Discovery

Role of the Retinoblastoma protein, Rb, during adult neurogenesis in the olfactory bulb

(2016) Rayan Naser et al.   Scientific Reports

An Adaptor Hierarchy Regulates Proteolysis during a Bacterial Cell Cycle

(2015) Kamal Kishore Joshi et al.   CELL

SOX9 modulates the expression of key transcription factors required for heart valve development

(2015) V. C. Garside et al.   DEVELOPMENT

Morphogen rules: design principles of gradient-mediated embryo patterning

(2015) J. Briscoe et al.   DEVELOPMENT

Identifying Novel Transcriptional Regulators with Circadian Expression

(2015) Sandra Schick et al.   MOLECULAR AND CELLULAR BIOLOGY

Models for patterning primary embryonic body axes: The role of space and time

(2015) Hans Meinhardt   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Fucci2a:A bicistronic cell cycle reporter that allows Cre mediated tissue specific expression in mice

(2014) Richard Lester Mort et al.   CELL CYCLE

Pulses of Notch activation synchronise oscillating somite cells and entrain the zebrafish segmentation clock

(2014) C. Soza-Ried et al.   DEVELOPMENT

Primary cilium and sonic hedgehog signaling during neural tube patterning: Role of GPCRs and second messengers

(2014) Kasturi Pal et al.   Developmental Neurobiology

CLOCK-Controlled Polyphonic Regulation of Circadian Rhythms through Canonical and Noncanonical E-Boxes

(2014) H. Yoshitane et al.   MOLECULAR AND CELLULAR BIOLOGY

Robust synchronization of coupled circadian and cell cycle oscillators in single mammalian cells

(2014) J. Bieler et al.   Molecular Systems Biology

Signalling dynamics in vertebrate segmentation

(2014) Alexis Hubaud et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Non-Circadian Expression Masking Clock-Driven Weak Transcription Rhythms in U2OS Cells

(2014) Julia Hoffmann et al.   PLoS One

The Cell-Cycle State of Stem Cells Determines Cell Fate Propensity

(2013) Siim Pauklin et al.   CELL

FOXO6 promotes gastric cancer cell tumorigenicity via upregulation of C-myc

(2013) Li Qinyu et al.   FEBS LETTERS

Quantitative single-cell RNA-seq with unique molecular identifiers

(2013) Saiful Islam et al.   NATURE METHODS

Control of cell cycle transcription during G1 and S phases

(2013) Cosetta Bertoli et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Oscillatory Control of Factors Determining Multipotency and Fate in Mouse Neural Progenitors

(2013) I. Imayoshi et al.   SCIENCE

The Circadian Clock Gates the Intestinal Stem Cell Regenerative State

(2013) Phillip Karpowicz et al.   Cell Reports

The Prdm family: expanding roles in stem cells and development

(2012) T. Hohenauer et al.   DEVELOPMENT

Regulation of p53 Stability and Apoptosis by a ROR Agonist

(2012) Yongjun Wang et al.   PLoS One

Forkhead box N4 (Foxn4) activates Dll4-Notch signaling to suppress photoreceptor cell fates of early retinal progenitors

(2012) H. Luo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Signaling Mechanisms Controlling Cell Fate and Embryonic Patterning

(2012) N. Perrimon et al.   Cold Spring Harbor Perspectives in Biology

Opposing Effects of Circadian Clock Genes Bmal1 and Period2 in Regulation of VEGF-Dependent Angiogenesis in Developing Zebrafish

(2012) Lasse Dahl Jensen et al.   Cell Reports

Notch signaling: simplicity in design, versatility in function

(2011) E. R. Andersson et al.   DEVELOPMENT

The circadian molecular clock creates epidermal stem cell heterogeneity

(2011) Peggy Janich et al.   NATURE

On the intrinsic inevitability of cancer: From foetal to fatal attraction

(2011) Sui Huang   SEMINARS IN CANCER BIOLOGY

Regulation of sonic hedgehog-GLI1 downstream target genes PTCH1, Cyclin D2, Plakoglobin, PAX6 and NKX2.2 and their epigenetic status in medulloblastoma and astrocytoma

(2010) Mehdi H Shahi et al.   BMC CANCER

Periodic Cyclin-Cdk Activity Entrains an Autonomous Cdc14 Release Oscillator

(2010) Ying Lu et al.   CELL

Overexpression of the JmjC histone demethylase KDM5B in human carcinogenesis: involvement in the proliferation of cancer cells through the E2F/RB pathway

(2010) Shinya Hayami et al.   Molecular Cancer

Sonic hedgehog in temporal control of somite formation

(2010) T. P. Resende et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Cell Cycle Control of Wnt Receptor Activation

(2009) Gary Davidson et al.   DEVELOPMENTAL CELL

Critical roles for SoxC transcription factors in development and cancer

(2009) Alfredo I. Penzo-Méndez   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

E2f1–3 switch from activators in progenitor cells to repressors in differentiating cells

(2009) Jean-Leon Chong et al.   NATURE

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Dynamic Pax6 expression during the neurogenic cell cycle influences proliferation and cell fate choices of retinal progenitors

(2009) Yi-Wen Hsieh et al.   Neural Development

Visualizing Spatiotemporal Dynamics of Multicellular Cell-Cycle Progression

(2008) Asako Sakaue-Sawano et al.   CELL

A Systematic Screen for Transcriptional Regulators of the Yeast Cell Cycle

(2008) M. A. White et al.   GENETICS

An embryonic stem cell–like gene expression signature in poorly differentiated aggressive human tumors

(2008) Ittai Ben-Porath et al.   NATURE GENETICS

Segmental patterning of the vertebrate embryonic axis

(2008) Mary-Lee Dequéant et al.   NATURE REVIEWS GENETICS

Oscillations in Notch Signaling Regulate Maintenance of Neural Progenitors

(2008) Hiromi Shimojo et al.   NEURON

Analysis of gene expression in a developmental context emphasizes distinct biological leitmotifs in human cancers

(2008) Kamila Naxerova et al.   GENOME BIOLOGY