HIV-1 transmission networks in high risk fishing communities on the shores of Lake Victoria in Uganda: A phylogenetic and epidemiological approach

Population attributable fraction of incident HIV infections associated with alcohol consumption in fishing communities around Lake Victoria, Uganda

(2017) Noah Kiwanuka et al.   PLoS One

Social and Genetic Networks of HIV-1 Transmission in New York City

(2017) Joel O. Wertheim et al.   PLoS Pathogens

Voluntary medical male circumcision for HIV prevention in fishing communities in Uganda: the influence of local beliefs and practice

(2016) Martin Mbonye et al.   AJAR-African Journal of AIDS Research

Association of Medical Male Circumcision and Antiretroviral Therapy Scale-up With Community HIV Incidence in Rakai, Uganda

(2016) Xiangrong Kong et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Heterogeneity of HIV incidence: a comparative analysis between fishing communities and in a neighbouring rural general population, Uganda, and implications for HIV control

(2016) A Kamali et al.   SEXUALLY TRANSMITTED INFECTIONS

Comparison of HIV incidence estimated in clinical trial and observational cohort settings in a high risk fishing population in Uganda: Implications for sample size estimates

(2016) Andrew Abaasa et al.   VACCINE

Using nearly full-genome HIV sequence data improves phylogeny reconstruction in a simulated epidemic

(2016) Gonzalo Yebra et al.   Scientific Reports

Heterogeneity of the HIV epidemic in agrarian, trading, and fishing communities in Rakai, Uganda: an observational epidemiological study

(2016) Larry W Chang et al.   Lancet HIV

Community perspective on the INSIGHT Strategic Timing of AntiRetroviral Treatment (START) trial

(2015) N Geffen et al.   HIV MEDICINE

Impact of Sampling Density on the Extent of HIV Clustering

(2014) Vlad Novitsky et al.   AIDS RESEARCH AND HUMAN RETROVIRUSES

Phylogenetic Studies of Transmission Dynamics in Generalized HIV Epidemics

(2014) Ann M. Dennis et al.   JAIDS-JOURNAL OF ACQUIRED IMMUNE DEFICIENCY SYNDROMES

Understanding Drivers of Phylogenetic Clustering in Molecular Epidemiological Studies of HIV

(2014) S. D. W. Frost et al.   JOURNAL OF INFECTIOUS DISEASES

The Impact of Clinical, Demographic and Risk Factors on Rates of HIV Transmission: A Population-based Phylogenetic Analysis in British Columbia, Canada

(2014) Art F. Y. Poon et al.   JOURNAL OF INFECTIOUS DISEASES

Transformation of HIV from pandemic to low-endemic levels: a public health approach to combination prevention

(2014) Alexandra Jones et al.   LANCET

COMET: adaptive context-based modeling for ultrafast HIV-1 subtype identification

(2014) Daniel Struck et al.   NUCLEIC ACIDS RESEARCH

High Incidence of HIV-1 Infection in a General Population of Fishing Communities around Lake Victoria, Uganda

(2014) Noah Kiwanuka et al.   PLoS One

Molecular tools for studying HIV transmission in sexual networks

(2014) Mary K. Grabowski et al.   Current Opinion in HIV and AIDS

Linkage of Viral Sequences among HIV-Infected Village Residents in Botswana: Estimation of Linkage Rates in the Presence of Missing Data

(2014) Nicole Bohme Carnegie et al.   PLoS Computational Biology

The Role of Viral Introductions in Sustaining Community-Based HIV Epidemics in Rural Uganda: Evidence from Spatial Clustering, Phylogenetics, and Egocentric Transmission Models

(2014) Mary K. Grabowski et al.   PLOS MEDICINE

Phylogenetic inferences on HIV-1 transmission

(2013) Bluma Brenner et al.   AIDS

HIV Type 1 Transmission Networks Among Men Having Sex with Men and Heterosexuals in Kenya

(2013) Daniela Bezemer et al.   AIDS RESEARCH AND HUMAN RETROVIRUSES

Automated analysis of phylogenetic clusters

(2013) Manon Ragonnet-Cronin et al.   BMC BIOINFORMATICS

Antiretroviral therapy for prevention of HIV transmission: implications for Europe

(2013) V Cambiano et al.   Eurosurveillance

Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: Performance evaluation of the new REGA version 3 and seven other tools

(2013) Andrea-Clemencia Pineda-Peña et al.   INFECTION GENETICS AND EVOLUTION

How the Dynamics and Structure of Sexual Contact Networks Shape Pathogen Phylogenies

(2013) Katy Robinson et al.   PLoS Computational Biology

Viral Phylodynamics

(2013) Erik M. Volz et al.   PLoS Computational Biology

Spatial accessibility and the spread of HIV-1 subtypes and recombinants

(2012) Andrew J. Tatem et al.   AIDS

HIV-1 Subtype Distribution Trends and Evidence of Transmission Clusters Among Incident Cases in a Rural Clinical Cohort in Southwest Uganda, 2004–2010

(2012) Anne Kapaata et al.   AIDS RESEARCH AND HUMAN RETROVIRUSES

HIV-1 Subtype F1 Epidemiological Networks among Italian Heterosexual Males Are Associated with Introduction Events from South America

(2012) Alessia Lai et al.   PLoS One

High HIV Incidence and Socio-Behavioral Risk Patterns in Fishing Communities on the Shores of Lake Victoria, Uganda

(2012) Janet Seeley et al.   SEXUALLY TRANSMITTED DISEASES

Extended high viremics

(2011) Vladimir Novitsky et al.   AIDS

HIV Type 1 Subtype Distribution, Multiple Infections, Sexual Networks, and Partnership Histories in Female Sex Workers in Kampala, Uganda

(2011) Deogratius Ssemwanga et al.   AIDS RESEARCH AND HUMAN RETROVIRUSES

HIV and syphilis prevalence and associated risk factors among fishing communities of Lake Victoria, Uganda

(2011) G. Asiki et al.   SEXUALLY TRANSMITTED INFECTIONS

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Localized spatial clustering of HIV infections in a widely disseminated rural South African epidemic

(2009) F. Tanser et al.   INTERNATIONAL JOURNAL OF EPIDEMIOLOGY

Molecular Phylodynamics of the Heterosexual HIV Epidemic in the United Kingdom

(2009) Gareth J. Hughes et al.   PLoS Pathogens

Episodic Sexual Transmission of HIV Revealed by Molecular Phylodynamics

(2008) Fraser Lewis et al.   PLOS MEDICINE