The Impact of Clinical, Demographic and Risk Factors on Rates of HIV Transmission: A Population-based Phylogenetic Analysis in British Columbia, Canada

Nondisclosure prosecutions and population health outcomes: examining HIV testing, HIV diagnoses, and the attitudes of men who have sex with men following nondisclosure prosecution media releases in Ottawa, Canada

(2013) Patrick O’Byrne et al.   BMC PUBLIC HEALTH

Viral Phylodynamics

(2013) Erik M. Volz et al.   PLoS Computational Biology

Global epidemiology of HIV infection in men who have sex with men

(2012) Chris Beyrer et al.   LANCET

Inferring Epidemic Contact Structure from Phylogenetic Trees

(2012) Gabriel E. Leventhal et al.   PLoS Computational Biology

Transmission Network Parameters Estimated From HIV Sequences for a Nationwide Epidemic

(2011) Andrew J. Leigh Brown et al.   JOURNAL OF INFECTIOUS DISEASES

Transmission Clustering Drives the Onward Spread of the HIV Epidemic Among Men Who Have Sex With Men in Quebec

(2011) Bluma G. Brenner et al.   JOURNAL OF INFECTIOUS DISEASES

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

An Evolutionary Model-Based Algorithm for Accurate Phylogenetic Breakpoint Mapping and Subtype Prediction in HIV-1

(2009) Sergei L. Kosakovsky Pond et al.   PLoS Computational Biology

qpcR: an R package for sigmoidal model selection in quantitative real-time polymerase chain reaction analysis

(2008) C. Ritz et al.   BIOINFORMATICS

Episodic Sexual Transmission of HIV Revealed by Molecular Phylodynamics

(2008) Fraser Lewis et al.   PLOS MEDICINE