Genomics clarifies taxonomic boundaries in a difficult species complex
Published 2017 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Genomics clarifies taxonomic boundaries in a difficult species complex
Authors
Keywords
Taxonomy, Eels, Genome complexity, Species delimitation, Lakes, Sequence alignment, Structural genomics, Genomic libraries
Journal
PLoS One
Volume 12, Issue 12, Pages e0189417
Publisher
Public Library of Science (PLoS)
Online
2017-12-13
DOI
10.1371/journal.pone.0189417
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Genotype Imputation with Millions of Reference Samples
- (2016) Brian L. Browning et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Novel Concordance Between Geographic, Environmental, and Genetic Structure in the Ecological Generalist Prickly Sculpin (Cottus asper) in California
- (2016) Jason Baumsteiger et al. JOURNAL OF HEREDITY
- Phylogenetics support an ancient common origin of two scientific icons: Devils Hole and Devils Hole pupfish
- (2016) İsmaİl K. Sağlam et al. MOLECULAR ECOLOGY
- pophelper: an R package and web app to analyse and visualize population structure
- (2016) R. M. Francis Molecular Ecology Resources
- The Thirsty Eel: Summer and Winter Flow Thresholds that Tilt the Eel River of Northwestern California from Salmon-Supporting to Cyanobacterially Degraded States
- (2015) Mary E. Power et al. COPEIA
- RAD Capture (Rapture): Flexible and Efficient Sequence-Based Genotyping
- (2015) O. A. Ali et al. GENETICS
- ngsTools: methods for population genetics analyses from next-generation sequencing data
- (2014) Matteo Fumagalli et al. BIOINFORMATICS
- ANGSD: Analysis of Next Generation Sequencing Data
- (2014) Thorfinn Sand Korneliussen et al. BMC BIOINFORMATICS
- Complex phylogeography and historical hybridization between sister taxa of freshwater sculpin (Cottus)
- (2014) Jason Baumsteiger et al. MOLECULAR ECOLOGY
- The biodiversity of species and their rates of extinction, distribution, and protection
- (2014) S. L. Pimm et al. SCIENCE
- Global Biodiversity Assessment and Hyper-Cryptic Species Complexes: More Than One Species of Elephant in the Room?
- (2014) Mark Adams et al. SYSTEMATIC BIOLOGY
- Calculation of Tajima’s D and other neutrality test statistics from low depth next-generation sequencing data
- (2013) Thorfinn Sand Korneliussen et al. BMC BIOINFORMATICS
- Genome sequence-based species delimitation with confidence intervals and improved distance functions
- (2013) Jan P Meier-Kolthoff et al. BMC BIOINFORMATICS
- Quantifying Population Genetic Differentiation from Next-Generation Sequencing Data
- (2013) Matteo Fumagalli et al. GENETICS
- Estimating Individual Admixture Proportions from Next Generation Sequencing Data
- (2013) Line Skotte et al. GENETICS
- Can We Name Earth's Species Before They Go Extinct?
- (2013) M. J. Costello et al. SCIENCE
- Genome sequencing and population genomics in non-model organisms
- (2013) Hans Ellegren TRENDS IN ECOLOGY & EVOLUTION
- Impacts of climate change on the future of biodiversity
- (2012) Céline Bellard et al. ECOLOGY LETTERS
- Population genomic signatures of divergent adaptation, gene flow and hybrid speciation in the rapid radiation of Lake Victoria cichlid fishes
- (2012) I. Keller et al. MOLECULAR ECOLOGY
- SNP Calling, Genotype Calling, and Sample Allele Frequency Estimation from New-Generation Sequencing Data
- (2012) Rasmus Nielsen et al. PLoS One
- A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
- (2011) H. Li BIOINFORMATICS
- Rapid decline of California’s native inland fishes: A status assessment
- (2011) Peter B. Moyle et al. BIOLOGICAL CONSERVATION
- Estimation of allele frequency and association mapping using next-generation sequencing data
- (2011) Su Kim et al. BMC BIOINFORMATICS
- A conserved haplotype controls parallel adaptation in geographically distant salmonid populations
- (2011) MICHAEL R. MILLER et al. MOLECULAR ECOLOGY
- Phylogeny, diversity, and species delimitation of the North American Round-Nosed Minnows (Teleostei: Dionda), as inferred from mitochondrial and nuclear DNA sequences
- (2011) Susana Schönhuth et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Has the Earth’s sixth mass extinction already arrived?
- (2011) Anthony D. Barnosky et al. NATURE
- Genotype and SNP calling from next-generation sequencing data
- (2011) Rasmus Nielsen et al. NATURE REVIEWS GENETICS
- Climate Change, Keystone Predation, and Biodiversity Loss
- (2011) C. D. G. Harley SCIENCE
- The integrative future of taxonomy
- (2010) Jose M. Padial et al. Frontiers in Zoology
- Genomics and the future of conservation genetics
- (2010) Fred W. Allendorf et al. NATURE REVIEWS GENETICS
- Understanding the onset of hybrid speciation
- (2010) Arne W. Nolte et al. TRENDS IN GENETICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Nuclear and mitochondrial diversification in two native California minnows: insights into taxonomic identity and regional phylogeography
- (2009) Andres Aguilar et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- SEASONAL REASSEMBLY OF A RIVER FOOD WEB: FLOODS, DROUGHTS, AND IMPACTS OF FISH
- (2008) Mary E. Power et al. ECOLOGICAL MONOGRAPHS
- When to stop managing or surveying cryptic threatened species
- (2008) I. Chades et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now