Transcriptomic profiling in muscle and adipose tissue identifies genes related to growth and lipid deposition

Identification of genes in longissimus dorsi muscle differentially expressed between Wannanhua and Yorkshire pigs using RNA-sequencing

(2016) X.-J. Li et al.   ANIMAL GENETICS

The Secreted Enzyme PM20D1 Regulates Lipidated Amino Acid Uncouplers of Mitochondria

(2016) Jonathan Z. Long et al.   CELL

InterPro in 2017—beyond protein family and domain annotations

(2016) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

UniProt: the universal protein knowledgebase

(2016)   NUCLEIC ACIDS RESEARCH

KEGG: new perspectives on genomes, pathways, diseases and drugs

(2016) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Identification of genes for controlling swine adipose deposition by integrating transcriptome, whole-genome resequencing, and quantitative trait loci data

(2016) Kai Xing et al.   Scientific Reports

LOLA: enrichment analysis for genomic region sets and regulatory elements in R and Bioconductor

(2015) Nathan C. Sheffield et al.   BIOINFORMATICS

Gene coexpression networks reveal key drivers of phenotypic divergence in porcine muscle

(2015) Xiao Zhao et al.   BMC GENOMICS

Dynamic transcriptome profiles of skeletal muscle tissue across 11 developmental stages for both Tongcheng and Yorkshire pigs

(2015) Yuqiang Zhao et al.   BMC GENOMICS

Comparison of skeletal muscle miRNA and mRNA profiles among three pig breeds

(2015) Xinhua Hou et al.   MOLECULAR GENETICS AND GENOMICS

Developmental progress and current status of the Animal QTLdb

(2015) Zhi-Liang Hu et al.   NUCLEIC ACIDS RESEARCH

Database resources of the National Center for Biotechnology Information

(2015)   NUCLEIC ACIDS RESEARCH

Integration of Transcriptome and Whole Genomic Resequencing Data to Identify Key Genes Affecting Swine Fat Deposition

(2015) Kai Xing et al.   PLoS One

Integrated analysis of miRNA and mRNA paired expression profiling of prenatal skeletal muscle development in three genotype pigs

(2015) Zhonglin Tang et al.   Scientific Reports

Identification of Common Regulators of Genes in Co-Expression Networks Affecting Muscle and Meat Properties

(2015) Siriluck Ponsuksili et al.   PLoS One

Identification of Genes Related to Growth and Lipid Deposition from Transcriptome Profiles of Pig Muscle Tissue

(2015) Zhixiu Wang et al.   PLoS One

Comparative Analysis of Muscle Transcriptome between Pig Genotypes Identifies Genes and Regulatory Mechanisms Associated to Growth, Fatness and Metabolism

(2015) Miriam Ayuso et al.   PLoS One

The comparison of energy metabolism and meat quality among three pig breeds

(2014) Linyuan Shen et al.   ANIMAL SCIENCE JOURNAL

Longissimus dorsi transcriptome analysis of purebred and crossbred Iberian pigs differing in muscle characteristics

(2014) Cristina Óvilo et al.   BMC GENOMICS

Identification of co-expression gene networks, regulatory genes and pathways for obesity based on adipose tissue RNA Sequencing in a porcine model

(2014) Lisette J A Kogelman et al.   BMC Medical Genomics

Comparative transcriptomic analysis to identify differentially expressed genes in fat tissue of adult Berkshire and Jeju Native Pig using RNA-seq

(2014) Simrinder Singh Sodhi et al.   MOLECULAR BIOLOGY REPORTS

Differences in Muscle Transcriptome among Pigs Phenotypically Extreme for Fatty Acid Composition

(2014) Anna Puig-Oliveras et al.   PLoS One

Loss ofALDH18A1function is associated with a cellular lipid droplet phenotype suggesting a link between autosomal recessive cutis laxa type 3A and Warburg Micro syndrome

(2014) Mark T. Handley et al.   Molecular Genetics & Genomic Medicine

Age-related changes and nutritional regulation of myosin heavy-chain composition in longissimus dorsi of commercial pigs

(2013) X. M. Men et al.   Animal

Correlated mRNAs and miRNAs from co-expression and regulatory networks affect porcine muscle and finally meat properties

(2013) Siriluck Ponsuksili et al.   BMC GENOMICS

Analysis of porcine adipose tissue transcriptome reveals differences in de novo fatty acid synthesis in pigs with divergent muscle fatty acid composition

(2013) Jordi Corominas et al.   BMC GENOMICS

Fatty Acid and Transcriptome Profiling of Longissimus Dorsi Muscles between Pig Breeds Differing in Meat Quality

(2013) Kaifan Yu et al.   International Journal of Biological Sciences

Very Low Density Lipoprotein Receptor (VLDLR) Expression Is a Determinant Factor in Adipose Tissue Inflammation and Adipocyte-Macrophage Interaction

(2013) Andrew Nguyen et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Gene expression profiling reveals distinct features of various porcine adipose tissues

(2013) Chaowei Zhou et al.   Lipids in Health and Disease

APOOL Is a Cardiolipin-Binding Constituent of the Mitofilin/MINOS Protein Complex Determining Cristae Morphology in Mammalian Mitochondria

(2013) Tobias A. Weber et al.   PLoS One

Sex and Breed-Dependent Organ Development and Metabolic Responses in Foetuses from Lean and Obese/Leptin Resistant Swine

(2013) Laura Torres-Rovira et al.   PLoS One

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Liver transcriptome profile in pigs with extreme phenotypes of intramuscular fatty acid composition

(2012) Yuliaxis Ramayo-Caldas et al.   BMC GENOMICS

Short Communication Differential expression analysis of porcine MDH1, MDH2 and ME1 genes in adipose tissues

(2012) S.L. Zhou et al.   GENETICS AND MOLECULAR RESEARCH

Comparison of Muscle Transcriptome between Pigs with Divergent Meat Quality Phenotypes Identifies Genes Related to Muscle Metabolism and Structure

(2012) Marie Damon et al.   PLoS One

The sequence and analysis of a Chinese pig genome

(2012) Xiaodong Fang et al.   GigaScience

Transcriptome profile analysis of porcine adipose tissue by high-throughput sequencing

(2011) X. J. Li et al.   ANIMAL GENETICS

Comparative Analyses by Sequencing of Transcriptomes during Skeletal Muscle Development between Pig Breeds Differing in Muscle Growth Rate and Fatness

(2011) Xiao Zhao et al.   PLoS One

Is My Network Module Preserved and Reproducible?

(2011) Peter Langfelder et al.   PLoS Computational Biology

Leptin in farm animals: where are we and where can we go?

(2010) A. R. G. Wylie   Animal

Two Novel Coding SNPs ofSREBP1cGene are Associated with Body Weight and Average Daily Gain in Bovine

(2010) Yongzhen Huang et al.   ANIMAL BIOTECHNOLOGY

Adipocyte extracellular matrix composition, dynamics and role in obesity

(2010) Edwin C. M. Mariman et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Comparative studies of skeletal muscle proteome and transcriptome profilings between pig breeds

(2010) Nam-Kuk Kim et al.   MAMMALIAN GENOME

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Adipose tissue as an endocrine organ

(2009) Sandra Galic et al.   MOLECULAR AND CELLULAR ENDOCRINOLOGY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Identification of a Lipokine, a Lipid Hormone Linking Adipose Tissue to Systemic Metabolism

(2008) Haiming Cao et al.   CELL

Adipose tissue transcriptomic signature highlights the pathological relevance of extracellular matrix in human obesity

(2008) Corneliu Henegar et al.   GENOME BIOLOGY

Fat deposition, fatty acid composition and meat quality: A review

(2007) J.D. Wood et al.   MEAT SCIENCE