A genome-wide analysis of the RNA-guided silencing pathway in coffee reveals insights into its regulatory mechanisms

Six Medicago truncatula Dicer-like protein genes are expressed in plant cells and upregulated in nodules

(2016) Aleksander Tworak et al.   PLANT CELL REPORTS

MicroRNA390 Is Involved in Cadmium Tolerance and Accumulation in Rice

(2016) Yanfei Ding et al.   Frontiers in Plant Science

In silicomining of novel microRNAs from coffee (Coffea arabica) using expressed sequence tags

(2016) K. B. Rebijith et al.   JOURNAL OF HORTICULTURAL SCIENCE & BIOTECHNOLOGY

RNA-Directed DNA Methylation: The Evolution of a Complex Epigenetic Pathway in Flowering Plants

(2015) Marjori A. Matzke et al.   Annual Review of Plant Biology

New Insights on Coffea miRNAs: Features and Evolutionary Conservation

(2015) S. S. Chaves et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

miRVine: a microRNA expression atlas of grapevine based on small RNA sequencing

(2015) Jayakumar Belli Kullan et al.   BMC GENOMICS

Evolution, functions, and mysteries of plant ARGONAUTE proteins

(2015) Han Zhang et al.   CURRENT OPINION IN PLANT BIOLOGY

RNA Pol IV and V in gene silencing: Rebel polymerases evolving away from Pol II's rules

(2015) Ming Zhou et al.   CURRENT OPINION IN PLANT BIOLOGY

The expanding world of small RNAs in plants

(2015) Filipe Borges et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Transcriptomic analysis suggests a key role for SQUAMOSA PROMOTER BINDING PROTEIN LIKE ,NAC and YUCCA genes in the heteroblastic development of the temperate rainforest tree Gevuina avellana (Proteaceae)

(2015) Enrique Ostria-Gallardo et al.   NEW PHYTOLOGIST

Genome-wide identification andin silicocharacterisation of microRNAs, their targets and processing pathway genes inPhaseolus vulgarisL.

(2015) T. C. de Sousa Cardoso et al.   PLANT BIOLOGY

KH domain protein RCF3 is a tissue-biased regulator of the plant miRNA biogenesis cofactor HYL1

(2015) Patricia Karlsson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biogenesis, Function, and Applications of Virus-Derived Small RNAs in Plants

(2015) Chao Zhang et al.   Frontiers in Microbiology

The Diversity, Biogenesis, and Activities of Endogenous Silencing Small RNAs inArabidopsis

(2014) Nicolas G. Bologna et al.   Annual Review of Plant Biology

MicroRNA mediates DNA methylation of target genes

(2014) Wangxiong Hu et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Identification of RNA silencing components in soybean and sorghum

(2014) Xiang Liu et al.   BMC BIOINFORMATICS

Identification of novel and conserved microRNAs in Coffea canephora and Coffea arabica

(2014) Guilherme Loss-Morais et al.   GENETICS AND MOLECULAR BIOLOGY

Ectopic expression of miR156 represses nodulation and causes morphological and developmental changes in Lotus japonicus

(2014) Ying Wang et al.   MOLECULAR GENETICS AND GENOMICS

RNA-directed DNA methylation: an epigenetic pathway of increasing complexity

(2014) Marjori A. Matzke et al.   NATURE REVIEWS GENETICS

OsmiR396d-Regulated OsGRFs Function in Floral Organogenesis in Rice through Binding to Their Targets OsJMJ706 and OsCR4

(2014) H. Liu et al.   PLANT PHYSIOLOGY

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis

(2014) F. Denoeud et al.   SCIENCE

Classification and Comparison of Small RNAs from Plants

(2013) Michael J. Axtell   Annual Review of Plant Biology

Biogenesis, Turnover, and Mode of Action of Plant MicroRNAs

(2013) K. Rogers et al.   PLANT CELL

RACK1 scaffold proteins influence miRNA abundance in Arabidopsis

(2013) Corinna Speth et al.   PLANT JOURNAL

Identification of miRNAs and miRNA-mediated regulatory pathways in Carica papaya

(2013) Gang Liang et al.   PLANTA

Identification and Characterization of miRNA Transcriptome in Potato by High-Throughput Sequencing

(2013) Runxuan Zhang et al.   PLoS One

Arabidopsis C-Terminal Domain Phosphatase-Like 1 Functions in miRNA Accumulation and DNA Methylation

(2013) In Sil Jeong et al.   PLoS One

Computational identification of miRNA and targets from expressed sequence tags of coffee (Coffea arabica)

(2013) Arzuba Akter et al.   SAUDI JOURNAL OF BIOLOGICAL SCIENCES

Genome-wide identification of Dicer-like, Argonaute and RNA-dependent RNA polymerase gene families and their expression analyses in response to viral infection and abiotic stresses in Solanum lycopersicum

(2012) Miao Bai et al.   GENE

Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome

(2012) A. T. Wierzbicki et al.   GENES & DEVELOPMENT

Regulation of reproductive development by non-coding RNA in Arabidopsis: to flower or not to flower

(2012) Ayako Yamaguchi et al.   JOURNAL OF PLANT RESEARCH

Deep Annotation of Populus trichocarpa microRNAs from Diverse Tissue Sets

(2012) Joshua R. Puzey et al.   PLoS One

Regulation of miRNA abundance by RNA binding protein TOUGH in Arabidopsis

(2012) G. Ren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functions of microRNAs in plant stress responses

(2012) Ramanjulu Sunkar et al.   TRENDS IN PLANT SCIENCE

The role of Mediator in small and long noncoding RNA production inArabidopsis thaliana

(2011) Yun Ju Kim et al.   EMBO JOURNAL

Genome-wide identification of novel microRNAs and their target genes in the human parasite Schistosoma mansoni

(2011) Matheus de Souza Gomes et al.   GENOMICS

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

Identification and characterization of Dicer-like, Argonaute and RNA-dependent RNA polymerase gene families in maize

(2011) Yexiong Qian et al.   PLANT CELL REPORTS

Identification of aluminum-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing

(2011) Lei Chen et al.   PLANTA

Regulation of flowering time and floral patterning by miR172

(2010) Qian-Hao Zhu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

(2010) Julie A. Law et al.   NATURE REVIEWS GENETICS

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

miR156-Targeted and Nontargeted SBP-Box Transcription Factors Act in Concert to Secure Male Fertility inArabidopsis

(2010) Shuping Xing et al.   PLANT CELL

Temporal Control of Trichome Distribution by MicroRNA156-Targeted SPL Genes in Arabidopsis thaliana

(2010) N. Yu et al.   PLANT CELL

Plant microRNAs: An insight into their gene structures and evolution

(2010) Guiliang Tang   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Small RNAs and Their Roles in Plant Development

(2009) Xuemei Chen   Annual Review of Cell and Developmental Biology

miR156-Regulated SPL Transcription Factors Define an Endogenous Flowering Pathway in Arabidopsis thaliana

(2009) Jia-Wei Wang et al.   CELL

Evolution of the RNA-dependent RNA polymerase (RdRP) genes: Duplications and possible losses before and after the divergence of major eukaryotic groups

(2009) Jie Zong et al.   GENE

RNA polymerase V transcription guides ARGONAUTE4 to chromatin

(2009) Andrzej T Wierzbicki et al.   NATURE GENETICS

RNAi-mediated viral immunity requires amplification of virus-derived siRNAs in Arabidopsis thaliana

(2009) X.-B. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice

(2008) Meenu Kapoor et al.   BMC GENOMICS

Specificity of ARGONAUTE7-miR390 Interaction and Dual Functionality in TAS3 Trans-Acting siRNA Formation

(2008) Taiowa A. Montgomery et al.   CELL

The FHA domain proteins DAWDLE in Arabidopsis and SNIP1 in humans act in small RNA biogenesis

(2008) B. Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The RNA-binding proteins HYL1 and SE promote accurate in vitro processing of pri-miRNA by DCL1

(2008) Z. Dong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Use, tolerance and avoidance of amplified RNA silencing by plants

(2008) Olivier Voinnet   TRENDS IN PLANT SCIENCE

Plant ARGONAUTES

(2008) Hervé Vaucheret   TRENDS IN PLANT SCIENCE