Unraveling the environmental and anthropogenic drivers of bacterial community changes in the Estuary of Bilbao and its tributaries

Mississippi River Plume Enriches Microbial Diversity in the Northern Gulf of Mexico

(2016) Olivia U. Mason et al.   Frontiers in Microbiology

Bacterioplankton Dynamics within a Large Anthropogenically Impacted Urban Estuary

(2016) Thomas C. Jeffries et al.   Frontiers in Microbiology

MiSeq Sequencing Analysis of Bacterial Community Structures in Wastewater Treatment Plants

(2015) Yun Wen et al.   POLISH JOURNAL OF ENVIRONMENTAL STUDIES

Seasonal and axial variations of net water circulation and turnover in the estuary of Bilbao

(2014) Ibon Uriarte et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Preliminary Evidence for the Organisation of a Bacterial Community by Zooplanktivores at the Top of an Estuarine Planktonic Food Web

(2014) R. J. Wasserman et al.   MICROBIAL ECOLOGY

Strengths and Limitations of 16S rRNA Gene Amplicon Sequencing in Revealing Temporal Microbial Community Dynamics

(2014) Rachel Poretsky et al.   PLoS One

Comparison of the Microbial Community Structures of Untreated Wastewaters from Different Geographic Locales

(2013) Orin C. Shanks et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight

(2013) Cheryl-Emiliane T Chow et al.   ISME Journal

Carbon fluxes through estuarine bacteria reflect coupling with phytoplankton

(2013) XAG Morán et al.   MARINE ECOLOGY PROGRESS SERIES

Dissolved oxygen in the rehabilitation phase of an estuary: Influence of sewage pollution abatement and hydro-climatic factors

(2013) Fernando Villate et al.   MARINE POLLUTION BULLETIN

Differential abundance analysis for microbial marker-gene surveys

(2013) Joseph N Paulson et al.   NATURE METHODS

Short-Read Assembly of Full-Length 16S Amplicons Reveals Bacterial Diversity in Subsurface Sediments

(2013) Christopher S. Miller et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

EMPeror: a tool for visualizing high-throughput microbial community data

(2013) Yoshiki Vázquez-Baeza et al.   GigaScience

Bacterial communities in different sections of a municipal wastewater treatment plant revealed by 16S rDNA 454 pyrosequencing

(2012) Lin Ye et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Bacterial diversity, community structure and potential growth rates along an estuarine salinity gradient

(2012) Barbara J Campbell et al.   ISME Journal

Expression patterns reveal niche diversification in a marine microbial assemblage

(2012) Scott M Gifford et al.   ISME Journal

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Genome Sequence of "Candidatus Aquiluna" sp. Strain IMCC13023, a Marine Member of the Actinobacteria Isolated from an Arctic Fjord

(2012) I. Kang et al.   JOURNAL OF BACTERIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Phylogenetic and Functional Metagenomic Profiling for Assessing Microbial Biodiversity in Environmental Monitoring

(2012) Veljo Kisand et al.   PLoS One

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates

(2011) Li C Xia et al.   BMC Systems Biology

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

(2011) Daniel PR Herlemann et al.   ISME Journal

Spatial variability overwhelms seasonal patterns in bacterioplankton communities across a river to ocean gradient

(2011) Caroline S Fortunato et al.   ISME Journal

Size-related response of zooplankton to hydroclimatic variability and water-quality in an organically polluted estuary of the Basque coast (Bay of Biscay)

(2011) Lander Intxausti et al.   JOURNAL OF MARINE SYSTEMS

Meeting Report: The Terabase Metagenomics Workshop and the Vision of an Earth Microbiome Project

(2011) Jack A. Gilbert et al.   Standards in Genomic Sciences

Eukaryotic Picoplankton in Surface Oceans

(2010) Ramon Massana   Annual Review of Microbiology

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Bacterial diversity of water and sediment in the Changjiang estuary and coastal area of the East China Sea

(2009) Bi-Wei Feng et al.   FEMS MICROBIOLOGY ECOLOGY

Description of seven candidate species affiliated with the phylum Actinobacteria, representing planktonic freshwater bacteria

(2009) M. W. Hahn   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Zooplankton communities in two contrasting Basque estuaries (1999-2001): reporting changes associated with ecosystem health

(2009) A. Albaina et al.   JOURNAL OF PLANKTON RESEARCH

Seasonal variability in bacterial abundance, production and protistan bacterivory in the lower Urdaibai estuary, Bay of Biscay

(2008) A Iriarte et al.   AQUATIC MICROBIAL ECOLOGY