Gene and metabolite time-course response to cigarette smoking in mouse lung and plasma

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

A novel type of cells expressing GP2 in the respiratory epithelium of the paranasal sinuses in mice

(2014) Shunsuke KIMURA et al.   BIOMEDICAL RESEARCH-TOKYO

Exposure of mice to secondhand smoke elicits both transient and long-lasting transcriptional changes in cancer-related functional networks

(2014) Stella Tommasi et al.   INTERNATIONAL JOURNAL OF CANCER

Impact of Cigarette Smoke on the Human and Mouse Lungs: A Gene-Expression Comparison Study

(2014) Mathieu C. Morissette et al.   PLoS One

Transient and Persistent Metabolomic Changes in Plasma following Chronic Cigarette Smoke Exposure in a Mouse Model

(2014) Charmion I. Cruickshank-Quinn et al.   PLoS One

NNK, a Tobacco-Specific Carcinogen, Inhibits the Expression of Lysyl Oxidase, a Tumor Suppressor

(2014) Guang Cheng et al.   International Journal of Environmental Research and Public Health

Data-based filtering for replicated high-throughput transcriptome sequencing experiments

(2013) Andrea Rau et al.   BIOINFORMATICS

Global methylation analysis identifies prognostically important epigenetically inactivated tumor suppressor genes in multiple myeloma

(2013) M. F. Kaiser et al.   BLOOD

Circadian clock function is disrupted by environmental tobacco/cigarette smoke, leading to lung inflammation and injury via a SIRT1-BMAL1 pathway

(2013) Jae-Woong Hwang et al.   FASEB JOURNAL

Whole DNA methylome profiling in mice exposed to secondhand smoke

(2012) Stella Tommasi et al.   Epigenetics

Detecting differential usage of exons from RNA-seq data

(2012) S. Anders et al.   GENOME RESEARCH

Lung endothelial monocyte-activating protein 2 is a mediator of cigarette smoke–induced emphysema in mice

(2011) Matthias Clauss et al.   JOURNAL OF CLINICAL INVESTIGATION

Fast and SNP-tolerant detection of complex variants and splicing in short reads

(2010) T. D. Wu et al.   BIOINFORMATICS

The Transcriptome of Nrf2−/− Mice Provides Evidence for Impaired Cell Cycle Progression in the Development of Cigarette Smoke–Induced Emphysematous Changes

(2010) Stephan Gebel et al.   TOXICOLOGICAL SCIENCES

Cigarette smoke-induced emphysema in A/J mice is associated with pulmonary oxidative stress, apoptosis of lung cells, and global alterations in gene expression

(2009) Tirumalai Rangasamy et al.   AMERICAN JOURNAL OF PHYSIOLOGY-LUNG CELLULAR AND MOLECULAR PHYSIOLOGY

GAGE: generally applicable gene set enrichment for pathway analysis

(2009) Weijun Luo et al.   BMC BIOINFORMATICS

Induction of the interleukin 6/ signal transducer and activator of transcription pathway in the lungs of mice sub-chronically exposed to mainstream tobacco smoke

(2009) Sabina Halappanavar et al.   BMC Medical Genomics

Nr1d1, an Important Circadian Pathway Regulatory Gene, Is Suppressed By Cigarette Smoke in Murine Lungs

(2009) Vihas T. Vasu et al.   INTEGRATIVE CANCER THERAPIES

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Spatial and Temporal Analysis of Gene Expression during Growth and Fusion of the Mouse Facial Prominences

(2009) Weiguo Feng et al.   PLoS One

Animal models of chronic obstructive pulmonary disease

(2008) Joanne L. Wright et al.   AMERICAN JOURNAL OF PHYSIOLOGY-LUNG CELLULAR AND MOLECULAR PHYSIOLOGY

Multifaceted mechanisms in COPD: inflammation, immunity, and tissue repair and destruction

(2008) K. F. Chung et al.   EUROPEAN RESPIRATORY JOURNAL

Toxicogenomic Analysis of Mainstream Tobacco Smoke-Exposed Mice Reveals Repression of Plasminogen Activator Inhibitor-1 Gene in Heart

(2008) Sabina Halappanavar et al.   INHALATION TOXICOLOGY

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH