Identifying novel fruit-related genes in Arabidopsis thaliana based on the random walk with restart algorithm
Published 2017 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Identifying novel fruit-related genes in Arabidopsis thaliana based on the random walk with restart algorithm
Authors
Keywords
Arabidopsis thaliana, Fruits, Seeds, Genetic networks, Serine, Permutation, Algorithms, Flowering plants
Journal
PLoS One
Volume 12, Issue 5, Pages e0177017
Publisher
Public Library of Science (PLoS)
Online
2017-05-05
DOI
10.1371/journal.pone.0177017
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Local-DPP: An improved DNA-binding protein prediction method by exploring local evolutionary information
- (2017) Leyi Wei et al. INFORMATION SCIENCES
- A network-based method for the identification of putative genes related to infertility
- (2016) ShaoPeng Wang et al. BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS
- Overexpression of plum auxin receptor PslTIR1 in tomato alters plant growth, fruit development and fruit shelf-life characteristics
- (2016) I. El-Sharkawy et al. BMC PLANT BIOLOGY
- Application of the Shortest Path Algorithm for the Discovery of Breast Cancer-Related Genes
- (2016) Lei Chen et al. Current Bioinformatics
- Seed abscission and fruit dehiscence required for seed dispersal rely on similar genetic networks
- (2016) Vicente Balanzà et al. DEVELOPMENT
- Post-endocytotic Deubiquitination and Degradation of the Metabotropic γ-Aminobutyric Acid Receptor by the Ubiquitin-specific Protease 14
- (2016) Nicolas Lahaie et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Detection of tubule boundaries based on circular shortest path and polar-transformation of arbitrary shapes
- (2016) R. SU et al. JOURNAL OF MICROSCOPY
- Identification of compound–protein interactions through the analysis of gene ontology, KEGG enrichment for proteins and molecular fragments of compounds
- (2016) Lei Chen et al. MOLECULAR GENETICS AND GENOMICS
- Identifying novel protein phenotype annotations by hybridizing protein–protein interactions and protein sequence similarities
- (2016) Lei Chen et al. MOLECULAR GENETICS AND GENOMICS
- Identification of novel proliferative diabetic retinopathy related genes on protein–protein interaction network
- (2016) Jian Zhang et al. NEUROCOMPUTING
- Managing the protein folding demands in the endoplasmic reticulum of plants
- (2016) Jian-Xiang Liu et al. NEW PHYTOLOGIST
- Exploring Mouse Protein Function via Multiple Approaches
- (2016) Guohua Huang et al. PLoS One
- OPMSP: A Computational Method Integrating Protein Interaction and Sequence Information for the Identification of Novel Putative Oncogenes
- (2016) Lei Chen et al. PROTEIN AND PEPTIDE LETTERS
- Identifying novel genes and chemicals related to nasopharyngeal cancer in a heterogeneous network
- (2016) Zhandong Li et al. Scientific Reports
- A Shortest-Path-Based Method for the Analysis and Prediction of Fruit-Related Genes in Arabidopsis thaliana
- (2016) Liucun Zhu et al. PLoS One
- Computational approaches towards understanding human long non-coding RNA biology
- (2015) Saakshi Jalali et al. BIOINFORMATICS
- Identifying Novel Candidate Genes Related to Apoptosis from a Protein-Protein Interaction Network
- (2015) Baoman Wang et al. Computational and Mathematical Methods in Medicine
- Mining for novel tumor suppressor genes using a shortest path approach
- (2015) Lei Chen et al. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
- Identification of Hepatocellular Carcinoma–Related Genes with a Machine Learning and Network Analysis
- (2015) Tuantuan Gui et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Characterization and molecular cloning of aserine hydroxymethyltransferase 1(OsSHM1) in rice
- (2015) Dekai Wang et al. Journal of Integrative Plant Biology
- A computational method for the identification of new candidate carcinogenic and non-carcinogenic chemicals
- (2015) Lei Chen et al. Molecular BioSystems
- Ectopic expression of UGT75D1, a glycosyltransferase preferring indole-3-butyric acid, modulates cotyledon development and stress tolerance in seed germination of Arabidopsis thaliana
- (2015) Gui-Zhi Zhang et al. PLANT MOLECULAR BIOLOGY
- Proteomic Analysis of Lettuce Seed Germination and Thermoinhibition by Sampling of Individual Seeds at Germination and Removal of Storage Proteins by Polyethylene Glycol Fractionation
- (2015) Wei-Qing Wang et al. PLANT PHYSIOLOGY
- Ubiquitin-dependent endocytosis of NKG2D-DAP10 receptor complexes activates signaling and functions in human NK cells
- (2015) Linda Quatrini et al. Science Signaling
- Mining for Candidate Genes Related to Pancreatic Cancer Using Protein-Protein Interactions and a Shortest Path Approach
- (2015) Fei Yuan et al. Biomed Research International
- Expression of Arabidopsis Hexokinase in Citrus Guard Cells Controls Stomatal Aperture and Reduces Transpiration
- (2015) Nitsan Lugassi et al. Frontiers in Plant Science
- Ubiquitin-dependent endocytosis of NKG2D-DAP10 receptor complexes activates signaling and functions in human NK cells
- (2015) Linda Quatrini et al. Science Signaling
- GPT2: a glucose 6-phosphate/phosphate translocator with a novel role in the regulation of sugar signalling during seedling development
- (2014) Beth C. Dyson et al. ANNALS OF BOTANY
- NMR Structure of the Human Rad18 Zinc Finger in Complex with Ubiquitin Defines a Class of UBZ Domains in Proteins Linked to the DNA Damage Response
- (2014) Alessandro A. Rizzo et al. BIOCHEMISTRY
- Quantitative proteomics of heavy metal exposure in Arabidopsis thaliana reveals alterations in one-carbon metabolism enzymes upon exposure to zinc
- (2014) Bronwyn J. Barkla et al. Journal of Proteomics
- Identification and transcript analysis of two glutamate decarboxylase genes, CsGAD1 and CsGAD2, reveal the strong relationship between CsGAD1 and citrate utilization in citrus fruit
- (2014) Xiao Liu et al. MOLECULAR BIOLOGY REPORTS
- Reduced seed germination inArabidopsisover-expressing SWI/SNF2 ATPase genes
- (2014) Hendrika A. C. F. Leeggangers et al. PHYSIOLOGIA PLANTARUM
- Arabidopsis Plastidial Folylpolyglutamate Synthetase Is Required for Seed Reserve Accumulation and Seedling Establishment in Darkness
- (2014) Hongyan Meng et al. PLoS One
- Analysis of Tumor Suppressor Genes Based on Gene Ontology and the KEGG Pathway
- (2014) Jing Yang et al. PLoS One
- A haploid genetics toolbox for Arabidopsis thaliana
- (2014) Maruthachalam Ravi et al. Nature Communications
- Gene Ontology and KEGG Enrichment Analyses of Genes Related to Age-Related Macular Degeneration
- (2014) Jian Zhang et al. Biomed Research International
- Regulation of Endoplasmic Reticulum-Associated Protein Degradation (ERAD) by Ubiquitin
- (2014) Leticia Lemus et al. Cells
- Folate polyglutamylation eliminates dependence of activity on enzyme concentration in mitochondrial serine hydroxymethyltransferases from Arabidopsis thaliana
- (2013) Zhaoyang Wei et al. ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS
- A Generalized Random Walk With Restart and its Application in Depth Up-Sampling and Interactive Segmentation
- (2013) Bumsub Ham et al. IEEE TRANSACTIONS ON IMAGE PROCESSING
- Selection of Discriminant Markers for Authentication of Asian Palm Civet Coffee (Kopi Luwak): A Metabolomics Approach
- (2013) Udi Jumhawan et al. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
- ARABIDOPSIS THALIANA HOMEOBOX25 Uncovers a Role for Gibberellins in Seed Longevity
- (2013) E. Bueso et al. PLANT PHYSIOLOGY
- A forward genetic approach in Arabidopsis thaliana identifies a RING-type ubiquitin ligase as a novel determinant of seed longevity
- (2013) Eduardo Bueso et al. PLANT SCIENCE
- Prediction of Gene Phenotypes Based on GO and KEGG Pathway Enrichment Scores
- (2013) Tao Zhang et al. Biomed Research International
- Characterizing genomic variation ofArabidopsis thaliana: the roles of geography and climate
- (2012) JESSE R. LASKY et al. MOLECULAR ECOLOGY
- STRING v9.1: protein-protein interaction networks, with increased coverage and integration
- (2012) Andrea Franceschini et al. NUCLEIC ACIDS RESEARCH
- The interaction of banana MADS-box protein MuMADS1 and ubiquitin-activating enzyme E-MuUBA in post-harvest banana fruit
- (2012) Ju-Hua Liu et al. PLANT CELL REPORTS
- Mutations in the F-box gene LARGER PANICLE improve the panicle architecture and enhance the grain yield in rice
- (2011) Ming Li et al. PLANT BIOTECHNOLOGY JOURNAL
- Arabidopsis Kinesin KP1 Specifically Interacts with VDAC3, a Mitochondrial Protein, and Regulates Respiration during Seed Germination at Low Temperature
- (2011) X.-Y. Yang et al. PLANT CELL
- Predicting Functions of Proteins in Mouse Based on Weighted Protein-Protein Interaction Network and Protein Hybrid Properties
- (2011) Lele Hu et al. PLoS One
- Expression of Trichoderma reesei β-Mannanase in Tobacco Chloroplasts and Its Utilization in Lignocellulosic Woody Biomass Hydrolysis
- (2011) Pankaj Agrawal et al. PLoS One
- One-carbon metabolism in plants: characterization of a plastid serine hydroxymethyltransferase
- (2010) Yi Zhang et al. BIOCHEMICAL JOURNAL
- Prediction of protein functions based on function–function correlation relations
- (2010) Ka-Lok Ng et al. COMPUTERS IN BIOLOGY AND MEDICINE
- Network medicine: a network-based approach to human disease
- (2010) Albert-László Barabási et al. NATURE REVIEWS GENETICS
- Plastidial glycolysis in developing Arabidopsis embryos
- (2009) Vasilios M. E. Andriotis et al. NEW PHYTOLOGIST
- Walking the Interactome for Prioritization of Candidate Disease Genes
- (2008) Sebastian Köhler et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Genomic imprinting: A balance between antagonistic roles of parental chromosomes
- (2008) T KINOSHITA et al. SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search