Exploring Mouse Protein Function via Multiple Approaches

Sequence-based prediction of protein-protein interactions using weighted sparse representation model combined with global encoding

(2016) Yu-An Huang et al.   BMC BIOINFORMATICS

Improving protein-protein interactions prediction accuracy using protein evolutionary information and relevance vector machine model

(2016) Ji-Yong An et al.   PROTEIN SCIENCE

Expression and bioregulation of the kallikrein-related peptidases family in the human neutrophil

(2015) Alejandro J Lizama et al.   Innate Immunity

Detection of Interactions between Proteins through Rotation Forest and Local Phase Quantization Descriptors

(2015) Leon Wong et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

SPEG Interacts with Myotubularin, and Its Deficiency Causes Centronuclear Myopathy with Dilated Cardiomyopathy

(2014) Pankaj B. Agrawal et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Plasmin Cleavage of von Willebrand Factor as an Emergency Bypass for ADAMTS13 Deficiency in Thrombotic Microangiopathy

(2014) Claudia Tersteeg et al.   CIRCULATION

Human mediator MED17 subunit plays essential roles in gene regulation by associating with the transcription and DNA repair machineries

(2014) Yuko Kikuchi et al.   GENES TO CELLS

Prediction of Protein S-Nitrosylation Sites Based on Adapted Normal Distribution Bi-Profile Bayes and Chou’s Pseudo Amino Acid Composition

(2014) Cangzhi Jia et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

A hybrid method for prediction and repositioning of drug Anatomical Therapeutic Chemical classes

(2014) Lei Chen et al.   Molecular BioSystems

Protein function prediction by massive integration of evolutionary analyses and multiple data sources

(2013) Domenico Cozzetto et al.   BMC BIOINFORMATICS

A large-scale evaluation of computational protein function prediction

(2013) Predrag Radivojac et al.   NATURE METHODS

iSNO-PseAAC: Predict Cysteine S-Nitrosylation Sites in Proteins by Incorporating Position Specific Amino Acid Propensity into Pseudo Amino Acid Composition

(2013) Yan Xu et al.   PLoS One

Phosphorylation of Sox9 is required for neural crest delamination and is regulated downstream of BMP and canonical Wnt signaling

(2013) J. A. J. Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Clinical and Biological Significance of KISS1 Expression in Prostate Cancer

(2012) Honghe Wang et al.   AMERICAN JOURNAL OF PATHOLOGY

Mouse Rif1 is a key regulator of the replication-timing programme in mammalian cells

(2012) Daniela Cornacchia et al.   EMBO JOURNAL

Duplicated Kiss1 receptor genes in zebrafish: distinct gene expression patterns, different ligand selectivity, and a novel nuclear isoform with transactivating activity

(2012) Takeshi A. Onuma et al.   FASEB JOURNAL

Keratin K18 Increases Cystic Fibrosis Transmembrane Conductance Regulator (CFTR) Surface Expression by Binding to Its C-terminal Hydrophobic Patch

(2012) Yuanyuan Duan et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Predicting membrane protein types by incorporating protein topology, domains, signal peptides, and physicochemical properties into the general form of Chou’s pseudo amino acid composition

(2012) Yen-Kuang Chen et al.   JOURNAL OF THEORETICAL BIOLOGY

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

Med5(Nut1) and Med17(Srb4) Are Direct Targets of Mediator Histone H4 Tail Interactions

(2012) Zhongle Liu et al.   PLoS One

Predicting Anatomical Therapeutic Chemical (ATC) Classification of Drugs by Integrating Chemical-Chemical Interactions and Similarities

(2012) Lei Chen et al.   PLoS One

An iterative approach of protein function prediction

(2011) Xiaoxiao Chi et al.   BMC BIOINFORMATICS

Protein function prediction: towards integration of similarity metrics

(2011) Serkan Erdin et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

PTK7/Otk interacts with Wnts and inhibits canonical Wnt signalling

(2011) Hanna Peradziryi et al.   EMBO JOURNAL

Predicting Functions of Proteins in Mouse Based on Weighted Protein-Protein Interaction Network and Protein Hybrid Properties

(2011) Lele Hu et al.   PLoS One

Caspase-3-mediated degradation of condensin Cap-H regulates mitotic cell death

(2010) S-K Lai et al.   CELL DEATH AND DIFFERENTIATION

Predicting membrane protein types by fusing composite protein sequence features into pseudo amino acid composition

(2010) Maqsood Hayat et al.   JOURNAL OF THEORETICAL BIOLOGY

Kisspeptin-Evoked Calcium Signals in Isolated Primary Rat Gonadotropin- Releasing Hormone Neurones

(2010) Heike Kroll et al.   NEUROENDOCRINOLOGY

Dali server: conservation mapping in 3D

(2010) Liisa Holm et al.   NUCLEIC ACIDS RESEARCH

Bayesian Markov Random Field Analysis for Protein Function Prediction Based on Network Data

(2010) Yiannis A. I. Kourmpetis et al.   PLoS One

Analysis and Prediction of the Metabolic Stability of Proteins Based on Their Sequential Features, Subcellular Locations and Interaction Networks

(2010) Tao Huang et al.   PLoS One

Structure of D-AKAP2:PKA RI Complex: Insights into AKAP Specificity and Selectivity

(2010) Ganapathy N. Sarma et al.   STRUCTURE

ESG: extended similarity group method for automated protein function prediction

(2009) Meghana Chitale et al.   BIOINFORMATICS

BioMart – biological queries made easy

(2009) Damian Smedley et al.   BMC GENOMICS

Myosin 1G (Myo1G) is a haematopoietic specific myosin that localises to the plasma membrane and regulates cell elasticity

(2009) Balaji Olety et al.   FEBS LETTERS

RPS25 is essential for translation initiation by the Dicistroviridae and hepatitis C viral IRESs

(2009) D. M. Landry et al.   GENES & DEVELOPMENT

D-AKAP2 Interacts with Rab4 and Rab11 through Its RGS Domains and Regulates Transferrin Receptor Recycling

(2009) Christopher T. Eggers et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

ConFunc—functional annotation in the twilight zone

(2008) Mark N. Wass et al.   BIOINFORMATICS

Searching protein structure databases with DaliLite v.3

(2008) L. Holm et al.   BIOINFORMATICS

The keratin-binding protein Albatross regulates polarization of epithelial cells

(2008) Masahiko Sugimoto et al.   JOURNAL OF CELL BIOLOGY

A machine-learning approach for predicting B-cell epitopes

(2008) Nimrod D. Rubinstein et al.   MOLECULAR IMMUNOLOGY

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH

Regulation of KiSS1 gene expression

(2008) Dali Li et al.   PEPTIDES

Global alignment of multiple protein interaction networks with application to functional orthology detection

(2008) R. Singh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PFP: Automated prediction of gene ontology functional annotations with confidence scores using protein sequence data

(2008) Troy Hawkins et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

PKD, PKD2, and p38 MAPK mediate Hsp27 serine-82 phosphorylation induced by neurotensin in pancreatic cancer PANC-1 cells

(2007) Jingzhen Yuan et al.   JOURNAL OF CELLULAR BIOCHEMISTRY