Genotyping-by-sequencing markers facilitate the identification of quantitative trait loci controlling resistance to Penicillium expansum in Malus sieversii

Development and validation of the Axiom®Apple480K SNP genotyping array

(2016) Luca Bianco et al.   PLANT JOURNAL

Alternative management technologies for postharvest disease control: The journey from simplicity to complexity

(2016) Michael Wisniewski et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

The science, development, and commercialization of postharvest biocontrol products

(2016) Samir Droby et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Development of SNP-based assays for disease resistance and fruit quality traits in apple (Malus × domestica Borkh.) and validation in breeding pilot studies

(2016) Isabelle O. Baumgartner et al.   Tree Genetics & Genomes

QTL analysis of soft scald in two apple populations

(2016) Kendra A McClure et al.   Horticulture Research

Chloroplast heterogeneity and historical admixture within the genus Malus

(2015) G. M. Volk et al.   AMERICAN JOURNAL OF BOTANY

The distribution and impact of common copy-number variation in the genome of the domesticated apple, Malus x domestica Borkh

(2015) James Boocock et al.   BMC GENOMICS

Susceptibility to blue mold caused by Penicillium expansum in apple cultivars adapted to a cool climate

(2015) I.I. Tahir et al.   EUROPEAN JOURNAL OF HORTICULTURAL SCIENCE

Current applications, challenges, and perspectives of marker-assisted seedling selection in Rosaceae tree fruit breeding

(2015) Sushan Ru et al.   Tree Genetics & Genomes

Heterozygous Mapping Strategy (HetMappS) for High Resolution Genotyping-By-Sequencing Markers: A Case Study in Grapevine

(2015) Katie E. Hyma et al.   PLoS One

Identification of QTLs associated with resistance to Phomopsis pod blight (Diaporthe toxica) in Lupinus albus

(2014) Raymond Cowley et al.   BREEDING SCIENCE

Molecular-level and trait-level differentiation between the cultivated apple (Malus× domestica Borkh.) and its main progenitor Malus sieversii

(2014) Satish Kumar et al.   Plant Genetic Resources-Characterization and Utilization

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

(2014) Jeffrey C. Glaubitz et al.   PLoS One

Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh)

(2014) Luca Bianco et al.   PLoS One

A strategy for developing representative germplasm sets for systematic QTL validation, demonstrated for apple, peach, and sweet cherry

(2014) C. P. Peace et al.   Tree Genetics & Genomes

Fast and Cost-Effective Genetic Mapping in Apple Using Next-Generation Sequencing

(2014) K. M. Gardner et al.   G3-Genes Genomes Genetics

Increasing maturity reduces wound response and lignification processes against Penicillium expansum (pathogen) and Penicillium digitatum (non-host pathogen) infection in apples

(2013) L. Vilanova et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Identification of Soybean Genotypes Resistant to and Genetic Mapping of Resistance Quantitative Trait Loci in the Cultivar Conrad

(2012) Margaret L. Ellis et al.   CROP SCIENCE

Genome-Wide SNP Detection, Validation, and Development of an 8K SNP Array for Apple

(2012) David Chagné et al.   PLoS One

A candidate gene for fire blight resistance in Malus × robusta 5 is coding for a CC–NBS–LRR

(2012) Johannes Fahrentrapp et al.   Tree Genetics & Genomes

New Insight into the History of Domesticated Apple: Secondary Contribution of the European Wild Apple to the Genome of Cultivated Varieties

(2012) Amandine Cornille et al.   PLoS Genetics

Multipoint maximum likelihood mapping in a full-sib family of an outbreeding species

(2011) J. W. VAN OOIJEN   Genetics Research

Use of a transgenic early flowering approach in apple (Malus × domestica Borkh.) to introgress fire blight resistance from cultivar Evereste

(2011) Pierre-Marie Le Roux et al.   MOLECULAR BREEDING

EST contig-based SSR linkage maps for Malus × domestica cv Royal Gala and an apple scab resistant accession of M. sieversii, the progenitor species of domestic apple

(2011) Aide Wang et al.   MOLECULAR BREEDING

Identification of serine/threonine kinase and nucleotide-binding site-leucine-rich repeat (NBS-LRR) genes in the fire blight resistance quantitative trait locus of apple cultivar ‘Evereste’

(2011) GABRIELLA PARRAVICINI et al.   MOLECULAR PLANT PATHOLOGY

Application of a high-speed breeding technology to apple (Malus × domestica) based on transgenic early flowering plants and marker-assisted selection

(2011) Henryk Flachowsky et al.   NEW PHYTOLOGIST

Identification of wild apple germplasm (Malus spp.) accessions with resistance to the postharvest decay pathogens Penicillium expansum and Colletotrichum acutatum

(2011) Wayne M. Jurick et al.   PLANT BREEDING

Postharvest Fruit Rots of Apple in Greece: Pathogen Incidence and Relationships Between Fruit Quality Parameters, Cultivar Susceptibility, and Patulin Production

(2011) S. Konstantinou et al.   PLANT DISEASE

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Genetic diversity of the genus Malus and implications for linkage mapping with SNPs

(2011) Diego Micheletti et al.   Tree Genetics & Genomes

The genome of the domesticated apple (Malus × domestica Borkh.)

(2010) Riccardo Velasco et al.   NATURE GENETICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Genome size and nucleotypic variation in Malus germplasm

(2009) Schuyler S. Korban et al.   GENOME

Two alternative recessive quantitative trait loci influence resistance to spring black stem and leaf spot in Medicago truncatula

(2008) Lars G Kamphuis et al.   BMC PLANT BIOLOGY

SNP high-throughput screening in grapevine using the SNPlex™ genotyping system

(2008) Massimo Pindo et al.   BMC PLANT BIOLOGY

Genetic diversity and population structure in Malus sieversii, a wild progenitor species of domesticated apple

(2008) Christopher M. Richards et al.   Tree Genetics & Genomes