A Comparison and Integration of MiSeq and MinION Platforms for Sequencing Single Source and Mixed Mitochondrial Genomes

Unified representation of genetic variants

(2015) Adrian Tan et al.   BIOINFORMATICS

Underlying Data for Sequencing the Mitochondrial Genome with the Massively Parallel Sequencing Platform Ion Torrent™ PGM™

(2015) Seung Bum Seo et al.   BMC GENOMICS

Mitochondrial Genome Acquisition Restores Respiratory Function and Tumorigenic Potential of Cancer Cells without Mitochondrial DNA

(2015) An S. Tan et al.   Cell Metabolism

Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome

(2015) Sara Goodwin et al.   GENOME RESEARCH

Improved data analysis for the MinION nanopore sequencer

(2015) Miten Jain et al.   NATURE METHODS

Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer

(2015) Andy Kilianski et al.   GigaScience

Meat Species Identification using Loop-mediated Isothermal Amplification Assay Targeting Species-specific Mitochondrial DNA

(2015) Ae-Ri Cho et al.   Korean Journal for Food Science of Animal Resources

Poretools: a toolkit for analyzing nanopore sequence data

(2014) N. J. Loman et al.   BIOINFORMATICS

Improved visibility of character conflicts in quasi-median networks with the EMPOP NETWORK software

(2014) Bettina Zimmermann et al.   CROATIAN MEDICAL JOURNAL

Analysis of the whole mitochondrial genome: translation of the Ion Torrent Personal Genome Machine system to the diagnostic bench?

(2014) Sara Seneca et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

High-quality and high-throughput massively parallel sequencing of the human mitochondrial genome using the Illumina MiSeq

(2014) Jonathan L. King et al.   Forensic Science International-Genetics

Massively parallel pyrosequencing of the mitochondrial genome with the 454 methodology in forensic genetics

(2014) Martin Mikkelsen et al.   Forensic Science International-Genetics

A first look at the Oxford Nanopore MinION sequencer

(2014) Alexander S. Mikheyev et al.   Molecular Ecology Resources

MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island

(2014) Philip M Ashton et al.   NATURE BIOTECHNOLOGY

A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer

(2014) Joshua Quick et al.   GigaScience

Evaluation of next generation mtGenome sequencing using the Ion Torrent Personal Genome Machine (PGM)

(2013) Walther Parson et al.   Forensic Science International-Genetics

Prevalence of rare mitochondrial DNA mutations in mitochondrial disorders

(2013) Sylvie Bannwarth et al.   JOURNAL OF MEDICAL GENETICS

Next generation molecular diagnosis of mitochondrial disorders

(2013) Lee-Jun C. Wong   MITOCHONDRION

Mitochondrial DNA Genetics and the Heteroplasmy Conundrum in Evolution and Disease

(2013) D. C. Wallace et al.   Cold Spring Harbor Perspectives in Biology

A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers

(2012) Michael Quail et al.   BMC GENOMICS

Mitochondria: In Sickness and in Health

(2012) Jodi Nunnari et al.   CELL

DNA commission of the International Society of Forensic Genetics: Recommendations on the evaluation of STR typing results that may include drop-out and/or drop-in using probabilistic methods

(2012) P. Gill et al.   Forensic Science International-Genetics

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Analysis of pork adulteration in commercial meatballs targeting porcine-specific mitochondrial cytochrome b gene by TaqMan probe real-time polymerase chain reaction

(2012) M.E. Ali et al.   MEAT SCIENCE

DNA barcoding as a tool for species identification in three forensic wildlife cases in South Africa

(2011) Desire L. Dalton et al.   FORENSIC SCIENCE INTERNATIONAL

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Determination of the variables affecting mixed MiniFiler™ DNA profiles

(2010) Jo-Anne Bright et al.   Forensic Science International-Genetics

High-throughput sequencing of complete human mtDNA genomes from the Philippines

(2010) E. D. Gunnarsdottir et al.   GENOME RESEARCH

The complete mitochondrial DNA genome of an unknown hominin from southern Siberia

(2010) Johannes Krause et al.   NATURE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Mixture Interpretation: Defining the Relevant Features for Guidelines for the Assessment of Mixed DNA Profiles in Forensic Casework

(2009) Bruce Budowle et al.   JOURNAL OF FORENSIC SCIENCES

Identification of meat species by TaqMan-based real-time PCR assay

(2009) Z. Kesmen et al.   MEAT SCIENCE

A Complete Neandertal Mitochondrial Genome Sequence Determined by High-Throughput Sequencing

(2008) Richard E. Green et al.   CELL

Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation

(2008) Mannis van Oven et al.   HUMAN MUTATION