Genomic and Evolutionary Analysis of Two Salmonella enterica Serovar Kentucky Sequence Types Isolated from Bovine and Poultry Sources in North America

Antimicrobial Susceptibility and Plasmid Replicon Typing ofSalmonella entericaSerovar Kentucky Isolates Recovered from Broilers

(2016) Scott R. Ladely et al.   Foodborne Pathogens and Disease

Improvements to a PCR-Based Serogrouping Scheme for Salmonella enterica from Dairy Farm Samples

(2015) JEFFREY S. KARNS et al.   JOURNAL OF FOOD PROTECTION

IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis: Figure 1.

(2015) Bhavjinder K. Dhillon et al.   NUCLEIC ACIDS RESEARCH

Molecular characterization of Salmonella enterica isolates associated with starling–livestock interactions

(2015) James C. Carlson et al.   VETERINARY MICROBIOLOGY

In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

(2014) Alessandra Carattoli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Molecular detection of the index case of a subclinical Salmonella Kentucky epidemic on a dairy farm

(2014) B. J. HALEY et al.   EPIDEMIOLOGY AND INFECTION

Isolation of Escherichia coli O157:H7 and Salmonella from Migratory Brown-Headed Cowbirds (Molothrus ater), Common Grackles (Quiscalus quiscula), and Cattle Egrets (Bubulcus ibis)

(2014) Todd R. Callaway et al.   Foodborne Pathogens and Disease

The complete sequence of Salmonella genomic island SGI1-K

(2014) M. Hamidian et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Isolation of Salmonella enterica Serovar Kentucky Strain ST 198 and Its H2S-Negative Variant from a Patient: Implications for Diagnosis

(2014) M. J. Albert et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Regional Distribution of Two Dairy-Associated Salmonella enterica Serotypes

(2013) Jo Ann S. Van Kessel et al.   Foodborne Pathogens and Disease

Phylogenetic Diversity of the Enteric Pathogen Salmonella enterica subsp. enterica Inferred from Genome-Wide Reference-Free SNP Characters

(2013) Ruth E. Timme et al.   Genome Biology and Evolution

Highly drug-resistant Salmonella enterica serotype Kentucky ST198-X1: a microbiological study

(2013) Simon Le Hello et al.   LANCET INFECTIOUS DISEASES

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Comprehensive Assignment of Roles for Salmonella Typhimurium Genes in Intestinal Colonization of Food-Producing Animals

(2013) Roy R. Chaudhuri et al.   PLoS Genetics

ramR mutations affecting fluoroquinolone susceptibility in epidemic multidrug-resistant Salmonella enterica serovar Kentucky ST198

(2013) Sylvie Baucheron et al.   Frontiers in Microbiology

Early Strains of Multidrug-Resistant Salmonella enterica Serovar Kentucky Sequence Type 198 from Southeast Asia Harbor Salmonella Genomic Island 1-J Variants with a Novel Insertion Sequence

(2012) Simon Le Hello et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Dynamics of Salmonella Serotype Shifts in an Endemically Infected Dairy Herd

(2012) Jo Ann S. Van Kessel et al.   Foodborne Pathogens and Disease

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Multilocus Sequence Typing as a Replacement for Serotyping in Salmonella enterica

(2012) Mark Achtman et al.   PLoS Pathogens

Population Dynamics of Salmonella enterica Serotypes in Commercial Egg and Poultry Production

(2011) Steven L. Foley et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Prevalence of Salmonella enterica, Listeria monocytogenes, and Escherichia coli Virulence Factors in Bulk Tank Milk and In-Line Filters from U.S. Dairies

(2011) JO ANN S. VAN KESSEL et al.   JOURNAL OF FOOD PROTECTION

International Spread of an Epidemic Population of Salmonella enterica Serotype Kentucky ST198 Resistant to Ciprofloxacin

(2011) S. Le Hello et al.   JOURNAL OF INFECTIOUS DISEASES

Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets

(2011) Robert Schmieder et al.   PLoS One

Horizontal Gene Transfer of a ColV Plasmid Has Resulted in a Dominant Avian Clonal Type of Salmonella enterica Serovar Kentucky

(2010) Timothy J. Johnson et al.   PLoS One

Antimicrobial Resistance-Conferring Plasmids with Similarity to Virulence Plasmids from Avian Pathogenic Escherichia coli Strains in Salmonella enterica Serovar Kentucky Isolates from Poultry

(2009) W. F. Fricke et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Salmonella takes control: effector-driven manipulation of the host

(2009) Emma J McGhie et al.   CURRENT OPINION IN MICROBIOLOGY

Sialic Acid Catabolism Confers a Competitive Advantage to Pathogenic Vibrio cholerae in the Mouse Intestine

(2009) S. Almagro-Moreno et al.   INFECTION AND IMMUNITY

Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae

(2009) J. Chun et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A GENEALOGICAL APPROACH TO QUANTIFYING LINEAGE DIVERGENCE

(2008) Michael P. Cummings et al.   EVOLUTION

Characterization of the myo-Inositol Utilization Island of Salmonella enterica serovar Typhimurium

(2008) C. Kroger et al.   JOURNAL OF BACTERIOLOGY

A Novel Secretion Pathway of Salmonella enterica Acts as an Antivirulence Modulator during Salmonellosis

(2008) Ohad Gal-Mor et al.   PLoS Pathogens