Deep, Staged Transcriptomic Resources for the Novel Coleopteran Models Atrachya menetriesi and Callosobruchus maculatus

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

The Genome and Methylome of a Beetle with Complex Social Behavior,Nicrophorus vespilloides(Coleoptera: Silphidae)

(2015) Christopher B. Cunningham et al.   Genome Biology and Evolution

Genome of the Rusty Millipede, Trigoniulus corallinus, Illuminates Diplopod, Myriapod, and Arthropod Evolution

(2015) Nathan J. Kenny et al.   Genome Biology and Evolution

Elucidation of the serosal cuticle machinery in the beetle Tribolium by RNA sequencing and functional analysis of Knickkopf1, Retroactive and Laccase2

(2015) Chris G.C. Jacobs et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

The Lophotrochozoan TGF-β signalling cassette - diversification and conservation in a key signalling pathway

(2015) Nathan J. Kenny et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Western corn rootworm (Diabrotica virgifera virgifera) transcriptome assembly and genomic analysis of population structure

(2014) Lex E Flagel et al.   BMC GENOMICS

Wnt/ -catenin signaling integrates patterning and metabolism of the insect growth zone

(2014) G. Oberhofer et al.   DEVELOPMENT

Ancient and diverged TGF-β signaling components in Nasonia vitripennis

(2014) Orhan Özüak et al.   DEVELOPMENT GENES AND EVOLUTION

Sequencing, De Novo Assembly and Annotation of the Colorado Potato Beetle, Leptinotarsa decemlineata, Transcriptome

(2014) Abhishek Kumar et al.   PLoS One

Tissue-Specific Transcript Profiling for ABC Transporters in the Sequestering Larvae of the Phytophagous Leaf Beetle Chrysomela populi

(2014) Anja S. Strauss et al.   PLoS One

De novo Sequencing, Assembly and Characterization of Antennal Transcriptome of Anomala corpulenta Motschulsky (Coleoptera: Rutelidae)

(2014) Haoliang Chen et al.   PLoS One

Mining of public sequencing databases supports a non-dietary origin for putative foreign miRNAs: underestimated effects of contamination in NGS

(2014) J. P. Tosar et al.   RNA

Transcriptomic study of the red palm weevilRhynchophorus ferrugineusembryogenesis

(2013) An Yin et al.   Insect Science

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest

(2013) Christopher I Keeling et al.   GENOME BIOLOGY

Combining proteomics and transcriptome sequencing to identify active plant-cell-wall-degrading enzymes in a leaf beetle

(2012) Roy Kirsch et al.   BMC GENOMICS

Transcriptome and full-length cDNA resources for the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major insect pest of pine forests

(2012) Christopher I. Keeling et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

B2G-FAR, a species-centered GO annotation repository

(2011) Stefan Götz et al.   BIOINFORMATICS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets

(2011) Robert Schmieder et al.   PLoS One

Population-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon

(2010) Shawn T O'Neil et al.   BMC GENOMICS

Biases in Illumina transcriptome sequencing caused by random hexamer priming

(2010) Kasper D. Hansen et al.   NUCLEIC ACIDS RESEARCH

Diversity of Beetle Genes Encoding Novel Plant Cell Wall Degrading Enzymes

(2010) Yannick Pauchet et al.   PLoS One

Features of the ancestral bilaterian inferred from Platynereis dumerilii ParaHox genes

(2009) Jerome HL Hui et al.   BMC BIOLOGY

Pyrosequencing of the midgut transcriptome of the poplar leaf beetle Chrysomela tremulae reveals new gene families in Coleoptera

(2009) Yannick Pauchet et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

TGFβ signaling in Tribolium: vertebrate-like components in a beetle

(2008) Maurijn Van der Zee et al.   DEVELOPMENT GENES AND EVOLUTION

HomeoDB: a database of homeobox gene diversity

(2008) Ying-Fu Zhong et al.   EVOLUTION & DEVELOPMENT

Cowpea bruchid midgut transcriptome response to a soybean cystatin - costs and benefits of counter-defence

(2008) Y. H. Chi et al.   INSECT MOLECULAR BIOLOGY

The genome of the model beetle and pest Tribolium castaneum

(2008) Stephen Richards et al.   NATURE

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH