Global Profiling of the Cellular Alternative RNA Splicing Landscape during Virus-Host Interactions

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The oncolytic virus, pelareorep, as a novel anticancer agent: a review

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Quantitative Proteomics Reveals Dynamic Interactions of the Minichromosome Maintenance Complex (MCM) in the Cellular Response to Etoposide Induced DNA Damage

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Distinct brain transcriptome profiles in C9orf72-associated and sporadic ALS

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A single amino acid substitution in the mRNA capping enzyme λ2 of a mammalian orthoreovirus mutant increases interferon sensitivity

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Widespread disruption of host transcription termination in HSV-1 infection

(2015) Andrzej J. Rutkowski et al.   Nature Communications

Proteomics and Transcriptomics of BJAB Cells Expressing the Epstein-Barr Virus Noncoding RNAs EBER1 and EBER2

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The Splicing Factor RBM4 Controls Apoptosis, Proliferation, and Migration to Suppress Tumor Progression

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SpliceVista, a Tool for Splice Variant Identification and Visualization in Shotgun Proteomics Data

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A day in the life of the spliceosome

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The InterPro protein families database: the classification resource after 15 years

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STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

The alternative splicing side of cancer

(2014) Giuseppe Biamonti et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Nonstructural Protein σ1s Mediates Reovirus-Induced Cell Cycle Arrest and Apoptosis

(2013) Karl W. Boehme et al.   JOURNAL OF VIROLOGY

Regulation of human papillomavirus gene expression by splicing and polyadenylation

(2013) Cecilia Johansson et al.   NATURE REVIEWS MICROBIOLOGY

Redirecting splicing with bifunctional oligonucleotides

(2013) Jean-Philippe Brosseau et al.   NUCLEIC ACIDS RESEARCH

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Hallmarks of alternative splicing in cancer

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Phylogenetic and Molecular Characterization of the Splicing Factor RBM4

(2013) Chia-Chen Lu et al.   PLoS One

Poliovirus 2A Protease Triggers a Selective Nucleo-Cytoplasmic Redistribution of Splicing Factors to Regulate Alternative Pre-mRNA Splicing

(2013) Enrique Álvarez et al.   PLoS One

Changes in Cellular mRNA Stability, Splicing, and Polyadenylation through HuR Protein Sequestration by a Cytoplasmic RNA Virus

(2013) Michael D. Barnhart et al.   Cell Reports

DAVID-WS: a stateful web service to facilitate gene/protein list analysis

(2012) X. Jiao et al.   BIOINFORMATICS

Reovirus Replication Protein  2 Influences Cell Tropism by Promoting Particle Assembly within Viral Inclusions

(2012) L. S. Ooms et al.   JOURNAL OF VIROLOGY

Fast gapped-read alignment with Bowtie 2

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The splicing factor SRSF1 regulates apoptosis and proliferation to promote mammary epithelial cell transformation

(2012) Olga Anczuków et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

ExPASy: SIB bioinformatics resource portal

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Tinkering with Translation: Protein Synthesis in Virus-Infected Cells

(2012) D. Walsh et al.   Cold Spring Harbor Perspectives in Biology

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Stabilisation of p53 enhances reovirus-induced apoptosis and virus spread through p53-dependent NF-κB activation

(2011) D Pan et al.   BRITISH JOURNAL OF CANCER

Splicing factor hnRNPH drives an oncogenic splicing switch in gliomas

(2011) Clare V LeFave et al.   EMBO JOURNAL

A Post-entry Step in the Mammalian Orthoreovirus Replication Cycle Is a Determinant of Cell Tropism

(2010) Laura S. Ooms et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The epithelial splicing factors ESRP1 and ESRP2 positively and negatively regulate diverse types of alternative splicing events

(2010) Claude C. Warzecha et al.   RNA Biology

Identification of Functional Domains in Reovirus Replication Proteins  NS and  2

(2009) T. Kobayashi et al.   JOURNAL OF VIROLOGY

Control of alternative splicing through siRNA-mediated transcriptional gene silencing

(2009) Mariano Alló et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Cancer-associated regulation of alternative splicing

(2009) Julian P Venables et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Systematic identification of cell cycle-dependent yeast nucleocytoplasmic shuttling proteins by prediction of composite motifs

(2009) S. Kosugi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multiple Alternative Splicing Markers for Ovarian Cancer

(2008) R. Klinck et al.   CANCER RESEARCH

Identification of Alternative Splicing Markers for Breast Cancer

(2008) J. P. Venables et al.   CANCER RESEARCH

Aberrant RNA splicing and its functional consequences in cancer cells

(2008) J. D. Fackenthal et al.   Disease Models & Mechanisms

The emerging role of splicing factors in cancer

(2008) Ana Rita Grosso et al.   EMBO REPORTS

Temporal regulation of adenovirus major late alternative RNA splicing

(2008) Goran Akusjarvi   Frontiers in Bioscience-Landmark

Reovirus  2 Protein Inhibits Interferon Signaling through a Novel Mechanism Involving Nuclear Accumulation of Interferon Regulatory Factor 9

(2008) J. Zurney et al.   JOURNAL OF VIROLOGY

Alternative isoform regulation in human tissue transcriptomes

(2008) Eric T. Wang et al.   NATURE

Drosophila RNAi screen identifies host genes important for influenza virus replication

(2008) Linhui Hao et al.   NATURE

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

(2008) Qun Pan et al.   NATURE GENETICS

HIV-1 infection induces changes in expression of cellular splicing factors that regulate alternative viral splicing and virus production in macrophages

(2008) Dinushka Dowling et al.   Retrovirology

Splicing regulation: From a parts list of regulatory elements to an integrated splicing code

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