Comparative Digital Gene Expression Analysis of the Arabidopsis Response to Volatiles Emitted by Bacillus amyloliquefaciens

The new flagella-associated collagen-like proteins ClpB and ClpC of Bacillus amyloliquefaciens FZB42 are involved in bacterial motility

(2016) Xia Zhao et al.   MICROBIOLOGICAL RESEARCH

Collagen-Like Proteins (ClpA, ClpB, ClpC, and ClpD) Are Required for Biofilm Formation and Adhesion to Plant Roots by Bacillus amyloliquefaciens FZB42

(2015) Xia Zhao et al.   PLoS One

Differential Transcriptomic Analysis by RNA-Seq of GSNO-Responsive Genes Between Arabidopsis Roots and Leaves

(2014) Juan C. Begara-Morales et al.   PLANT AND CELL PHYSIOLOGY

EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments

(2013) Ning Leng et al.   BIOINFORMATICS

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Transcript Pattern of Cytochrome P450, Antioxidant and Ginsenoside Biosynthetic Pathway Genes Under Heavy Metal Stress in Panax ginseng Meyer

(2012) Sri Renuka Devi Balusamy et al.   BULLETIN OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY

Gram-positive rhizobacterium Bacillus amyloliquefaciens FZB42 colonizes three types of plants in different patterns

(2012) Ben Fan et al.   JOURNAL OF MICROBIOLOGY

Pseudomonas fluorescensInduces Strain-Dependent and Strain-Independent Host Plant Responses in Defense Networks, Primary Metabolism, Photosynthesis, and Fitness

(2012) David J. Weston et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Landscape of transcription in human cells

(2012) Sarah Djebali et al.   NATURE

Transcriptome profiling and digital gene expression by deep-sequencing in normal/regenerative tissues of planarian Dugesia japonica

(2011) Yun-Fei Qin et al.   GENOMICS

Digital Gene Expression Profiling of the Phytophthora sojae Transcriptome

(2011) Wenwu Ye et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Choline and Osmotic-Stress Tolerance Induced inArabidopsisby the Soil MicrobeBacillus subtilis(GB03)

(2010) Huiming Zhang et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Proteome analysis of Arabidopsis seedlings exposed to bacterial volatiles

(2010) Young Sang Kwon et al.   PLANTA

3' tag digital gene expression profiling of human brain and universal reference RNA using Illumina Genome Analyzer

(2009) Yan W Asmann et al.   BMC GENOMICS

Deep sequencing of the zebrafish transcriptome response to mycobacterium infection

(2009) Zoltán Hegedűs et al.   MOLECULAR IMMUNOLOGY

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line

(2009) Harukazu Suzuki et al.   NATURE GENETICS

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Shoot Na+ Exclusion and Increased Salinity Tolerance Engineered by Cell Type-Specific Alteration of Na+ Transport in Arabidopsis

(2009) I. S. Moller et al.   PLANT CELL

A soil bacterium regulates plant acquisition of iron via deficiency-inducible mechanisms

(2009) Huiming Zhang et al.   PLANT JOURNAL

HKT transporter-mediated salinity resistance mechanisms in Arabidopsis and monocot crop plants

(2009) Tomoaki Horie et al.   TRENDS IN PLANT SCIENCE

Antagonistic Activities of Volatiles from Four Strains of Bacillus spp. and Paenibacillus spp. Against Soil-Borne Plant Pathogens

(2008) Wei-wei LIU et al.   Agricultural Sciences in China

Bacterial volatiles and their action potential

(2008) Marco Kai et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Serial Analysis of Gene Expression (SAGE): 13 Years of Application in Research

(2008) Sergey Anisimov   CURRENT PHARMACEUTICAL BIOTECHNOLOGY

More than Anticipated – Production of Antibiotics and Other Secondary Metabolites by Bacillus amyloliquefaciens FZB42

(2008) Xiao-Hua Chen et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

2R,3R-Butanediol, a Bacterial Volatile Produced byPseudomonas chlororaphisO6, Is Involved in Induction of Systemic Tolerance to Drought inArabidopsis thaliana

(2008) Song Mi Cho et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Soil Bacteria Confer Plant Salt Tolerance by Tissue-Specific Regulation of the Sodium TransporterHKT1

(2008) Huiming Zhang et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

A large genome center's improvements to the Illumina sequencing system

(2008) Michael A Quail et al.   NATURE METHODS

Soil bacteria augment Arabidopsis photosynthesis by decreasing glucose sensing and abscisic acid levels in planta

(2008) Huiming Zhang et al.   PLANT JOURNAL