Whole Transcriptome Profiling Identifies CD93 and Other Plasma Cell Survival Factor Genes Associated with Measles-Specific Antibody Response after Vaccination

The weight of obesity on the human immune response to vaccination

(2015) Scott D. Painter et al.   VACCINE

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

A Proteome-Scale Map of the Human Interactome Network

(2014) Thomas Rolland et al.   CELL

Measles and mumps outbreaks in the United States: Think globally, vaccinate locally

(2014) Jennifer A. Whitaker et al.   VACCINE

Transcriptomic profiles of high and low antibody responders to smallpox vaccine

(2013) R B Kennedy et al.   GENES AND IMMUNITY

Systems Scale Interactive Exploration Reveals Quantitative and Qualitative Differences in Response to Influenza and Pneumococcal Vaccines

(2013) Gerlinde Obermoser et al.   IMMUNITY

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Genome-Wide Characterization of Transcriptional Patterns in High and Low Antibody Responders to Rubella Vaccination

(2013) Iana H. Haralambieva et al.   PLoS One

Soft truncation thresholding for gene set analysis of RNA-seq data: Application to a vaccine study

(2013) Brooke L. Fridley et al.   Scientific Reports

Removing technical variability in RNA-seq data using conditional quantile normalization

(2012) K. D. Hansen et al.   BIOSTATISTICS

Technical and biological variance structure in mRNA-Seq data: life in the real world

(2012) Ann L Oberg et al.   BMC GENOMICS

Understanding the immune response to seasonal influenza vaccination in older adults: a systems biology approach

(2012) Nathaniel D Lambert et al.   Expert Review of Vaccines

Retention of Anergy and Inhibition of Antibody Responses during Acute Gammaherpesvirus 68 Infection

(2012) A. Getahun et al.   JOURNAL OF IMMUNOLOGY

Multigenic control of measles vaccine immunity mediated by polymorphisms in measles receptor, innate pathway, and cytokine genes

(2012) Richard B. Kennedy et al.   VACCINE

Systems biology approaches to new vaccine development

(2011) Ann L Oberg et al.   CURRENT OPINION IN IMMUNOLOGY

Prioritizing candidate disease genes by network-based boosting of genome-wide association data

(2011) I. Lee et al.   GENOME RESEARCH

The Association of CD46, SLAM and CD209 Cellular Receptor Gene SNPs with Variations in Measles Vaccine-Induced Immune Responses: A Replication Study and Examination of Novel Polymorphisms

(2011) Inna G. Ovsyannikova et al.   HUMAN HEREDITY

Systems biology of vaccination for seasonal influenza in humans

(2011) Helder I Nakaya et al.   NATURE IMMUNOLOGY

Vaccinomics and a New Paradigm for the Development of Preventive Vaccines Against Viral Infections

(2011) Gregory A. Poland et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Associations between single nucleotide polymorphisms and haplotypes in cytokine and cytokine receptor genes and immunity to measles vaccination

(2011) Iana H. Haralambieva et al.   VACCINE

Genetic polymorphisms in host antiviral genes: Associations with humoral and cellular immunity to measles vaccine

(2011) Iana H. Haralambieva et al.   VACCINE

A large observational study to concurrently assess persistence of measles specific B-cell and T-cell immunity in individuals following two doses of MMR vaccine

(2011) Iana H. Haralambieva et al.   VACCINE

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Vaccinomics, predictive vaccinology and the future of vaccine development

(2010) Iana H Haralambieva et al.   Future Microbiology

Measles in the United States during the Postelimination Era

(2010) Amy Parker Fiebelkorn et al.   JOURNAL OF INFECTIOUS DISEASES

The complement receptor CD46 tips the scales in TH1 self-control

(2010) Christian M Karsten et al.   NATURE IMMUNOLOGY

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

(2010) D. Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Interleukin-24 inhibits the plasma cell differentiation program in human germinal center B cells

(2009) G. Maarof et al.   BLOOD

CD93 is required for maintenance of antibody secretion and persistence of plasma cells in the bone marrow niche

(2009) S. Chevrier et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Systems biology approach predicts immunogenicity of the yellow fever vaccine in humans

(2008) Troy D Querec et al.   NATURE IMMUNOLOGY

Use and misuse of the gene ontology annotations

(2008) Seung Yon Rhee et al.   NATURE REVIEWS GENETICS