Whole-Genome Sequencing and Comparative Genome Analysis of Bacillus subtilis Strains Isolated from Non-Salted Fermented Soybean Foods

Poly-γ-glutamic acid: production, properties and applications

(2015) Adetoro Ogunleye et al.   MICROBIOLOGY-SGM

Trowel: a fast and accurate error correction module for Illumina sequencing reads

(2014) Eun-Cheon Lim et al.   BIOINFORMATICS

Sequencing depth and coverage: key considerations in genomic analyses

(2014) David Sims et al.   NATURE REVIEWS GENETICS

Whole Genome Complete Resequencing of Bacillus subtilis Natto by Combining Long Reads with High-Quality Short Reads

(2014) Mayumi Kamada et al.   PLoS One

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Genome sequencing of bacteria: sequencing, de novo assembly and rapid analysis using open source tools

(2013) Veljo Kisand et al.   BMC GENOMICS

Defects in the Flagellar Motor Increase Synthesis of Poly- -Glutamate in Bacillus subtilis

(2013) J. M. Chan et al.   JOURNAL OF BACTERIOLOGY

Oral Administration of Poly-γ-Glutamate Ameliorates Atopic Dermatitis in Nc/Nga Mice by Suppressing Th2-Biased Immune Response and Production of IL-17A

(2013) Tae-Young Lee et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Phylogenetic Analysis of Bacillus subtilis Strains Applicable to Natto (Fermented Soybean) Production

(2011) Yuji Kubo et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

BIGSdb: Scalable analysis of bacterial genome variation at the population level

(2011) Keith A Jolley et al.   BMC BIOINFORMATICS

Complete Genome Sequence of Bacillus amyloliquefaciens LL3, Which Exhibits Glutamic Acid-Independent Production of Poly- -Glutamic Acid

(2011) W. Geng et al.   JOURNAL OF BACTERIOLOGY

The genome sequence of Bacillus subtilis subsp. spizizenii W23: insights into speciation within the B. subtilis complex and into the history of B. subtilis genetics

(2011) D. R. Zeigler   MICROBIOLOGY-SGM

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

Whole genome assembly of a natto production strain Bacillus subtilis natto from very short read data

(2010) Yukari Nishito et al.   BMC GENOMICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Murasaki: A Fast, Parallelizable Algorithm to Find Anchors from Multiple Genomes

(2010) Kris Popendorf et al.   PLoS One

ABACAS: algorithm-based automatic contiguation of assembled sequences

(2009) S. Assefa et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later

(2009) V. Barbe et al.   MICROBIOLOGY-SGM

DNAPlotter: circular and linear interactive genome visualization

(2008) T. Carver et al.   BIOINFORMATICS

Phylogeny of γ-polyglutamic acid-producing Bacillus strains isolated from a fermented locust bean product manufactured in West Africa

(2008) Jomkhwan Meerak et al.   JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY

Coordinating assembly of a bacterial macromolecular machine

(2008) Fabienne F. V. Chevance et al.   NATURE REVIEWS MICROBIOLOGY