Whole-Genome Sequencing and Comparative Genome Analysis of Bacillus subtilis Strains Isolated from Non-Salted Fermented Soybean Foods
出版年份 2015 全文链接
标题
Whole-Genome Sequencing and Comparative Genome Analysis of Bacillus subtilis Strains Isolated from Non-Salted Fermented Soybean Foods
作者
关键词
Bacillus subtilis, Sequence alignment, Soybean, Genome analysis, Sequence assembly tools, Multiple alignment calculation, Biotin, Sequence analysis
出版物
PLoS One
Volume 10, Issue 10, Pages e0141369
出版商
Public Library of Science (PLoS)
发表日期
2015-10-28
DOI
10.1371/journal.pone.0141369
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Poly-γ-glutamic acid: production, properties and applications
- (2015) Adetoro Ogunleye et al. MICROBIOLOGY-SGM
- Trowel: a fast and accurate error correction module for Illumina sequencing reads
- (2014) Eun-Cheon Lim et al. BIOINFORMATICS
- Sequencing depth and coverage: key considerations in genomic analyses
- (2014) David Sims et al. NATURE REVIEWS GENETICS
- Whole Genome Complete Resequencing of Bacillus subtilis Natto by Combining Long Reads with High-Quality Short Reads
- (2014) Mayumi Kamada et al. PLoS One
- QUAST: quality assessment tool for genome assemblies
- (2013) Alexey Gurevich et al. BIOINFORMATICS
- Genome sequencing of bacteria: sequencing, de novo assembly and rapid analysis using open source tools
- (2013) Veljo Kisand et al. BMC GENOMICS
- Defects in the Flagellar Motor Increase Synthesis of Poly- -Glutamate in Bacillus subtilis
- (2013) J. M. Chan et al. JOURNAL OF BACTERIOLOGY
- Oral Administration of Poly-γ-Glutamate Ameliorates Atopic Dermatitis in Nc/Nga Mice by Suppressing Th2-Biased Immune Response and Production of IL-17A
- (2013) Tae-Young Lee et al. JOURNAL OF INVESTIGATIVE DERMATOLOGY
- MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
- (2013) Koichiro Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff
- (2012) Pablo Cingolani et al. FLY
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Phylogenetic Analysis of Bacillus subtilis Strains Applicable to Natto (Fermented Soybean) Production
- (2011) Yuji Kubo et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- BIGSdb: Scalable analysis of bacterial genome variation at the population level
- (2011) Keith A Jolley et al. BMC BIOINFORMATICS
- Complete Genome Sequence of Bacillus amyloliquefaciens LL3, Which Exhibits Glutamic Acid-Independent Production of Poly- -Glutamic Acid
- (2011) W. Geng et al. JOURNAL OF BACTERIOLOGY
- The genome sequence of Bacillus subtilis subsp. spizizenii W23: insights into speciation within the B. subtilis complex and into the history of B. subtilis genetics
- (2011) D. R. Zeigler MICROBIOLOGY-SGM
- Scaffolding pre-assembled contigs using SSPACE
- (2010) Marten Boetzer et al. BIOINFORMATICS
- Whole genome assembly of a natto production strain Bacillus subtilis natto from very short read data
- (2010) Yukari Nishito et al. BMC GENOMICS
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- Murasaki: A Fast, Parallelizable Algorithm to Find Anchors from Multiple Genomes
- (2010) Kris Popendorf et al. PLoS One
- ABACAS: algorithm-based automatic contiguation of assembled sequences
- (2009) S. Assefa et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later
- (2009) V. Barbe et al. MICROBIOLOGY-SGM
- DNAPlotter: circular and linear interactive genome visualization
- (2008) T. Carver et al. BIOINFORMATICS
- Phylogeny of γ-polyglutamic acid-producing Bacillus strains isolated from a fermented locust bean product manufactured in West Africa
- (2008) Jomkhwan Meerak et al. JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY
- Coordinating assembly of a bacterial macromolecular machine
- (2008) Fabienne F. V. Chevance et al. NATURE REVIEWS MICROBIOLOGY
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now