Implementation of a Pan-Genomic Approach to Investigate Holobiont-Infecting Microbe Interaction: A Case Report of a Leukemic Patient with Invasive Mucormycosis

Evolutionary history and global spread of the Mycobacterium tuberculosis Beijing lineage

(2015) Matthias Merker et al.   NATURE GENETICS

Sequence type 1 group BStreptococcus, an emerging cause of invasive disease in adults, evolves by small genetic changes

(2015) Anthony R. Flores et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Immune Correlates of Protection in Human Invasive Aspergillosis

(2014) J. F. Camargo et al.   CLINICAL INFECTIOUS DISEASES

What Is a Host? Incorporating the Microbiota into the Damage-Response Framework: TABLE 1

(2014) Arturo Casadevall et al.   INFECTION AND IMMUNITY

Gain-of-function signal transducer and activator of transcription 1 (STAT1) mutation–related primary immunodeficiency is associated with disseminated mucormycosis

(2014) Nilay Kumar et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

New insights into innate immune control of systemic candidiasis

(2014) Michail S. Lionakis   MEDICAL MYCOLOGY

Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile

(2014) Charlie G. Buffie et al.   NATURE

Rapid fucosylation of intestinal epithelium sustains host–commensal symbiosis in sickness

(2014) Joseph M. Pickard et al.   NATURE

Integrating mapping-, assembly- and haplotype-based approaches for calling variants in clinical sequencing applications

(2014) Andy Rimmer et al.   NATURE GENETICS

Genetic PTX3 Deficiency and Aspergillosis in Stem-Cell Transplantation

(2014) Cristina Cunha et al.   NEW ENGLAND JOURNAL OF MEDICINE

Intratumor heterogeneity in localized lung adenocarcinomas delineated by multiregion sequencing

(2014) J. Zhang et al.   SCIENCE

Disrupted human–pathogen co-evolution: a model for disease

(2014) Nuri Kodaman et al.   Frontiers in Genetics

The MaSuRCA genome assembler

(2013) Aleksey V. Zimin et al.   BIOINFORMATICS

Tryptophan Catabolites from Microbiota Engage Aryl Hydrocarbon Receptor and Balance Mucosal Reactivity via Interleukin-22

(2013) Teresa Zelante et al.   IMMUNITY

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Prospective antifungal therapy (PATH) alliance®: focus on mucormycosis

(2013) Dimitrios P. Kontoyiannis et al.   MYCOSES

Topographic diversity of fungal and bacterial communities in human skin

(2013) Keisha Findley et al.   NATURE

Debug Your Bugs – How NLRs Shape Intestinal Host-Microbe Interactions

(2013) Simone Lipinski et al.   Frontiers in Immunology

Bacterial Genomics in Infectious Disease and the Clinical Pathology Laboratory

(2012) Randall J. Olsen et al.   ARCHIVES OF PATHOLOGY & LABORATORY MEDICINE

Molecular systematics in the genus Mucor with special regards to species encountered in cheese

(2012) Antoine Hermet et al.   Fungal Biology

Is the CCR5 Δ 32 Mutation Associated with Immune System-Related Diseases?

(2012) Khodayar Ghorban et al.   INFLAMMATION

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

A framework for human microbiome research

(2012)   NATURE

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Host-pathogen coevolution in human tuberculosis

(2012) S. Gagneux   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Prognostic Power of the NOD2 Genotype for Complicated Crohn's Disease: A Meta-Analysis

(2011) Jeremy Adler et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

Hematogenously Disseminated Skin Disease Caused byMucor velutinosusin a Patient with Acute Myeloid Leukemia

(2011) Janyce A. Sugui et al.   JOURNAL OF CLINICAL MICROBIOLOGY

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Activity of Deferasirox inMucorales: Influences of Species and Exogenous Iron

(2010) Russell E. Lewis et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

A Common Polymorphism in the Caspase Recruitment Domain of RIG-I Modifies the Innate Immune Response of Human Dendritic Cells

(2010) J. Hu et al.   JOURNAL OF IMMUNOLOGY

Two new species ofMucorfrom clinicalsamples

(2010) Eduardo Álvarez et al.   MEDICAL MYCOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

CISHand Susceptibility to Infectious Diseases

(2010) Chiea C. Khor et al.   NEW ENGLAND JOURNAL OF MEDICINE

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Characterization of the Oral Fungal Microbiome (Mycobiome) in Healthy Individuals

(2010) Mahmoud A. Ghannoum et al.   PLoS Pathogens

Spectrum of Zygomycete Species Identified in Clinically Significant Specimens in the United States

(2009) E. Alvarez et al.   JOURNAL OF CLINICAL MICROBIOLOGY

InParanoid 7: new algorithms and tools for eukaryotic orthology analysis

(2009) G. Ostlund et al.   NUCLEIC ACIDS RESEARCH

The G428A Nonsense Mutation in FUT2 Provides Strong but Not Absolute Protection against Symptomatic GII.4 Norovirus Infection

(2009) Beatrice Carlsson et al.   PLoS One

Genomic Analysis of the Basal Lineage Fungus Rhizopus oryzae Reveals a Whole-Genome Duplication

(2009) Li-Jun Ma et al.   PLoS Genetics

Drosophila melanogaster as a model host to dissect the immunopathogenesis of zygomycosis

(2008) G. Chamilos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA