Identification of Photosynthesis-Associated C4 Candidate Genes through Comparative Leaf Gradient Transcriptome in Multiple Lineages of C3 and C4 Species

A Limited Role for Carbonic Anhydrase in C4 Photosynthesis as Revealed by a ca1ca2 Double Mutant in Maize

(2014) A. J. Studer et al.   PLANT PHYSIOLOGY

Evolutionary Convergence of Cell-Specific Gene Expression in Independent Lineages of C4 Grasses

(2014) C. R. John et al.   PLANT PHYSIOLOGY

Deep Evolutionary Comparison of Gene Expression Identifies Parallel Recruitment of Trans-Factors in Two Independent Origins of C4 Photosynthesis

(2014) Sylvain Aubry et al.   PLoS Genetics

Elucidating gene function and function evolution through comparison of co-expression networks of plants

(2014) Bjoern O. Hansen et al.   Frontiers in Plant Science

Parallel Recruitment of Multiple Genes into C4 Photosynthesis

(2013) Pascal-Antoine Christin et al.   Genome Biology and Evolution

Temperature response of photosynthesis in C3, C4, and CAM plants: temperature acclimation and temperature adaptation

(2013) Wataru Yamori et al.   PHOTOSYNTHESIS RESEARCH

Genome-wide transcript analysis of early maize leaf development reveals gene cohorts associated with the differentiation of C4Kranz anatomy

(2013) Peng Wang et al.   PLANT JOURNAL

Genome-Wide Analysis of Syntenic Gene Deletion in the Grasses

(2012) James C. Schnable et al.   Genome Biology and Evolution

Co-expression Analysis Identifies CRC and AP1 the Regulator of Arabidopsis Fatty Acid Biosynthesis

(2012) Xinxin Han et al.   Journal of Integrative Plant Biology

Reference genome sequence of the model plant Setaria

(2012) Jeffrey L Bennetzen et al.   NATURE BIOTECHNOLOGY

Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential

(2012) Gengyun Zhang et al.   NATURE BIOTECHNOLOGY

Characterizing Regulatory and Functional Differentiation between Maize Mesophyll and Bundle Sheath Cells by Transcriptomic Analysis

(2012) Y.-M. Chang et al.   PLANT PHYSIOLOGY

The grass leaf developmental gradient as a platform for a systems understanding of the anatomical specialization of C4 leaves

(2011) T. Nelson   JOURNAL OF EXPERIMENTAL BOTANY

Best practice procedures for the establishment of a C4 cycle in transgenic C3 plants

(2011) C. Peterhansel   JOURNAL OF EXPERIMENTAL BOTANY

Lessons from engineering a single-cell C4 photosynthetic pathway into rice

(2011) M. Miyao et al.   JOURNAL OF EXPERIMENTAL BOTANY

Exploiting the engine of C4 photosynthesis

(2011) R. F. Sage et al.   JOURNAL OF EXPERIMENTAL BOTANY

Strategies for engineering a two-celled C4 photosynthetic pathway into rice

(2011) K. Kajala et al.   JOURNAL OF EXPERIMENTAL BOTANY

The role of proteins in C3 plants prior to their recruitment into the C4 pathway

(2011) Sylvain Aubry et al.   JOURNAL OF EXPERIMENTAL BOTANY

The C4 plant lineages of planet Earth

(2011) R. F. Sage et al.   JOURNAL OF EXPERIMENTAL BOTANY

Systems Analysis of a Maize Leaf Developmental Gradient Redefines the Current C4 Model and Provides Candidates for Regulation

(2011) T. R. Pick et al.   PLANT CELL

Gene Coexpression Network Alignment and Conservation of Gene Modules between Two Grass Species: Maize and Rice

(2011) S. P. Ficklin et al.   PLANT PHYSIOLOGY

The Regulation of Gene Expression Required for C4Photosynthesis

(2010) Julian M. Hibberd et al.   Annual Review of Plant Biology

Improving Photosynthetic Efficiency for Greater Yield

(2010) Xin-Guang Zhu et al.   Annual Review of Plant Biology

The Evolution of Gene Regulatory Interactions

(2010) David A. Garfield et al.   BIOSCIENCE

DiffCoEx: a simple and sensitive method to find differentially coexpressed gene modules

(2010) Bruno M Tesson et al.   BMC BIOINFORMATICS

Plastid transport and metabolism of C3 and C4 plants—comparative analysis and possible biotechnological exploitation

(2010) Andreas PM Weber et al.   CURRENT OPINION IN PLANT BIOLOGY

The developmental dynamics of the maize leaf transcriptome

(2010) Pinghua Li et al.   NATURE GENETICS

Structural and Metabolic Transitions of C4 Leaf Development and Differentiation Defined by Microscopy and Quantitative Proteomics in Maize

(2010) W. Majeran et al.   PLANT CELL

The Association of Multiple Interacting Genes with Specific Phenotypes in Rice Using Gene Coexpression Networks

(2010) Stephen P. Ficklin et al.   PLANT PHYSIOLOGY

Reconstruction of Metabolic Pathways, Protein Expression, and Homeostasis Machineries across Maize Bundle Sheath and Mesophyll Chloroplasts: Large-Scale Quantitative Proteomics Using the First Maize Genome Assembly

(2010) G. Friso et al.   PLANT PHYSIOLOGY

An mRNA Blueprint for C4 Photosynthesis Derived from Comparative Transcriptomics of Closely Related C3 and C4 Species

(2010) A. Brautigam et al.   PLANT PHYSIOLOGY

Divergence of human and mouse brain transcriptome highlights Alzheimer disease pathways

(2010) Jeremy A. Miller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Sucrose transporter1 functions in phloem loading in maize leaves

(2009) Thomas L. Slewinski et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Sorghum bicolor genome and the diversification of grasses

(2009) Andrew H. Paterson et al.   NATURE

A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies

(2009) Yuling Jiao et al.   NATURE GENETICS

A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize

(2009) BJÖRN USADEL et al.   PLANT CELL AND ENVIRONMENT

Co-expression tools for plant biology: opportunities for hypothesis generation and caveats

(2009) BJ��RN USADEL et al.   PLANT CELL AND ENVIRONMENT

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

Cell-type-specific differentiation of chloroplasts in C4 plants

(2009) Wojciech Majeran et al.   TRENDS IN PLANT SCIENCE

Comparative genomic analysis of C4 photosynthetic pathway evolution in grasses

(2009) Xiyin Wang et al.   GENOME BIOLOGY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Using C4 photosynthesis to increase the yield of rice—rationale and feasibility

(2008) Julian M Hibberd et al.   CURRENT OPINION IN PLANT BIOLOGY

Consequences of C4Differentiation for Chloroplast Membrane Proteomes in Maize Mesophyll and Bundle Sheath Cells

(2008) Wojciech Majeran et al.   MOLECULAR & CELLULAR PROTEOMICS

Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation

(2008) Luis López-Maury et al.   NATURE REVIEWS GENETICS

Comparative Proteomics of Chloroplast Envelopes from C3 and C4 Plants Reveals Specific Adaptations of the Plastid Envelope to C4 Photosynthesis and Candidate Proteins Required for Maintaining C4 Metabolite Fluxes

(2008) A. Brautigam et al.   PLANT PHYSIOLOGY