Segmentation of Image Data from Complex Organotypic 3D Models of Cancer Tissues with Markov Random Fields

The need for complex 3D culture models to unravel novel pathways and identify accurate biomarkers in breast cancer

(2014) Britta Weigelt et al.   ADVANCED DRUG DELIVERY REVIEWS

Automated detection and tracking of many cells by using 4D live-cell imaging data

(2014) Terumasa Tokunaga et al.   BIOINFORMATICS

Accurate cell segmentation in microscopy images using membrane patterns

(2014) Sotiris Dimopoulos et al.   BIOINFORMATICS

Quantification of Dynamic Morphological Drug Responses in 3D Organotypic Cell Cultures by Automated Image Analysis

(2014) Ville Härmä et al.   PLoS One

Benchmark for multi-cellular segmentation of bright field microscopy images

(2013) Assaf Zaritsky et al.   BMC BIOINFORMATICS

Markov Random Field modeling, inference & learning in computer vision & image understanding: A survey

(2013) Chaohui Wang et al.   COMPUTER VISION AND IMAGE UNDERSTANDING

PCaAnalyser: A 2D-Image Analysis Based Module for Effective Determination of Prostate Cancer Progression in 3D Culture

(2013) Md Tamjidul Hoque et al.   PLoS One

Fast and robust optical flow for time-lapse microscopy using super-voxels

(2012) Fernando Amat et al.   BIOINFORMATICS

Cancer-Associated Fibroblasts Drive the Progression of Metastasis through both Paracrine and Mechanical Pressure on Cancer Tissue

(2012) G. S. Karagiannis et al.   MOLECULAR CANCER RESEARCH

Annotated high-throughput microscopy image sets for validation

(2012) Vebjorn Ljosa et al.   NATURE METHODS

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

A survey of graph theoretical approaches to image segmentation

(2012) Bo Peng et al.   PATTERN RECOGNITION

Computer Vision in Cell Biology

(2011) Gaudenz Danuser   CELL

A Semi-Markov Model for Mitosis Segmentation in Time-Lapse Phase Contrast Microscopy Image Sequences of Stem Cell Populations

(2011) An-An Liu et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Fast estimation of Gaussian mixture models for image segmentation

(2011) Nicola Greggio et al.   MACHINE VISION AND APPLICATIONS

Hallmarks of cancer: Interactions with the tumor stroma

(2010) Kristian Pietras et al.   EXPERIMENTAL CELL RESEARCH

A Comprehensive Panel of Three-Dimensional Models for Studies of Prostate Cancer Growth, Invasion and Drug Responses

(2010) Ville Härmä et al.   PLoS One

Tissue-Engineered Three-Dimensional In Vitro Models for Normal and Diseased Kidney

(2010) Balajikarthick Subramanian et al.   TISSUE ENGINEERING PART A

A biosegmentation benchmark for evaluation of bioimage analysis methods

(2009) Elisa Drelie Gelasca et al.   BMC BIOINFORMATICS

A systematic analysis of performance measures for classification tasks

(2009) Marina Sokolova et al.   INFORMATION PROCESSING & MANAGEMENT

Application of the split-gradient method to 3D image deconvolution in fluorescence microscopy

(2009) G. VICIDOMINI et al.   JOURNAL OF MICROSCOPY

Estimating the motion of plant root cells from in vivo confocal laser scanning microscopy images

(2009) Timothy J. Roberts et al.   MACHINE VISION AND APPLICATIONS

Modulated expression of WFDC1 during carcinogenesis and cellular senescence

(2008) Shalom Madar et al.   CARCINOGENESIS

Phase-subtraction cell-counting method for live mouse embryos beyond the eight-cell stage

(2008) William C. Warger et al.   JOURNAL OF BIOMEDICAL OPTICS