Diversification of the Genus Anopheles and a Neotropical Clade from the Late Cretaceous

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Multispecies Coalescent Analysis of the Early Diversification of Neotropical Primates: Phylogenetic Inference under Strong Gene Trees/Species Tree Conflict

(2014) C. G. Schrago et al.   Genome Biology and Evolution

Extensive introgression in a malaria vector species complex revealed by phylogenomics

(2014) M. C. Fontaine et al.   SCIENCE

Highly evolvable malaria vectors: The genomes of 16 Anopheles mosquitoes

(2014) D. E. Neafsey et al.   SCIENCE

Mitochondrial genome sequences reveal deep divergences among Anopheles punctulatus sibling species in Papua New Guinea

(2013) Kyle Logue et al.   MALARIA JOURNAL

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Human Plasmodium knowlesi infection in Ranong province, southwestern border of Thailand

(2012) Natthawan Sermwittayawong et al.   MALARIA JOURNAL

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

A global map of dominant malaria vectors

(2012) Marianne E Sinka et al.   Parasites & Vectors

Highly Incomplete Taxa Can Rescue Phylogenetic Analyses from the Negative Impacts of Limited Taxon Sampling

(2012) John J. Wiens et al.   PLoS One

Timing the origin of human malarias: the lemur puzzle

(2011) M Andreína Pacheco et al.   BMC EVOLUTIONARY BIOLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Complete mtDNA genomes of Anopheles darlingi and an approach to anopheline divergence time

(2010) Marta Moreno et al.   MALARIA JOURNAL

Genome sequences reveal divergence times of malaria parasite lineages

(2010) JOANA C. SILVA et al.   PARASITOLOGY

African apes as reservoirs of Plasmodium falciparum and the origin and diversification of the Laverania subgenus

(2010) L. Duval et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Molecular Clock for Malaria Parasites

(2010) R. E. Ricklefs et al.   SCIENCE

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Phylogenetic analysis and temporal diversification of mosquitoes (Diptera: Culicidae) based on nuclear genes and morphology

(2009) Kyanne R Reidenbach et al.   BMC EVOLUTIONARY BIOLOGY

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?

(2008) Scott V. Edwards   EVOLUTION

Saturation and base composition bias explain phylogenomic conflict in Plasmodium

(2008) Liliana M. Dávalos et al.   GENOMICS

Big Bang in the Evolution of Extant Malaria Parasites

(2008) T. Hayakawa et al.   MOLECULAR BIOLOGY AND EVOLUTION

Maximum Likelihood Inference of Geographic Range Evolution by Dispersal, Local Extinction, and Cladogenesis

(2008) Richard H. Ree et al.   SYSTEMATIC BIOLOGY

A three-genome phylogeny of malaria parasites (Plasmodium and closely related genera): Evolution of life-history traits and host switches

(2007) Ellen S. Martinsen et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION