The Carboxy Terminus of the Ligand Peptide Determines the Stability of the MHC Class I Molecule H-2Kb: A Combined Molecular Dynamics and Experimental Study

Peptide-dependent Conformational Fluctuation Determines the Stability of the Human Leukocyte Antigen Class I Complex

(2014) Saeko Yanaka et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Peptide-independent stabilization of MHC class I molecules breaches cellular quality control

(2014) Z. Hein et al.   JOURNAL OF CELL SCIENCE

A Comparative Study of HLA Binding Affinity and Ligand Diversity: Implications for Generating Immunodominant CD8+ T Cell Responses

(2014) X. Rao et al.   JOURNAL OF IMMUNOLOGY

Assessing the performance of MM/PBSA and MM/GBSA methods. 4. Accuracies of MM/PBSA and MM/GBSA methodologies evaluated by various simulation protocols using PDBbind data set

(2014) Huiyong Sun et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Two Polymorphisms Facilitate Differences in Plasticity between Two Chicken Major Histocompatibility Complex Class I Proteins

(2014) Alistair Bailey et al.   PLoS One

Modular peptide binding: From a comparison of natural binders to designed armadillo repeat proteins

(2013) Christian Reichen et al.   JOURNAL OF STRUCTURAL BIOLOGY

Structural and functional mosaic nature of MHC class I molecules in their peptide-free form

(2013) Eiji Kurimoto et al.   MOLECULAR IMMUNOLOGY

Not all empty MHC class I molecules are molten globules: Tryptophan fluorescence reveals a two-step mechanism of thermal denaturation

(2013) Sunil Kumar Saini et al.   MOLECULAR IMMUNOLOGY

Structural and Dynamical Insights on HLA-DR2 Complexes That Confer Susceptibility to Multiple Sclerosis in Sardinia: A Molecular Dynamics Simulation Study

(2013) Amit Kumar et al.   PLoS One

Dipeptides promote folding and peptide binding of MHC class I molecules

(2013) S. K. Saini et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Scrutinizing MHC-I Binding Peptides and Their Limits of Variation

(2013) Christian P. Koch et al.   PLoS Computational Biology

Peptide-MHC class I stability is a better predictor than peptide affinity of CTL immunogenicity

(2012) Mikkel Harndahl et al.   EUROPEAN JOURNAL OF IMMUNOLOGY

The Peptide-Receptive Transition State of MHC Class I Molecules: Insight from Structure and Molecular Dynamics

(2012) M. G. Mage et al.   JOURNAL OF IMMUNOLOGY

Entropy-enthalpy transduction caused by conformational shifts can obscure the forces driving protein-ligand binding

(2012) A. T. Fenley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epitope Flexibility and Dynamic Footprint Revealed by Molecular Dynamics of a pMHC-TCR Complex

(2012) Cyril F. Reboul et al.   PLoS Computational Biology

Tapasin dependence of major histocompatibility complex class I molecules correlates with their conformational flexibility

(2011) Malgorzata Anna Garstka et al.   FASEB JOURNAL

Dynamical Characterization of Two Differentially Disease Associated MHC Class I Proteins in Complex with Viral and Self-Peptides

(2011) Daniele Narzi et al.   JOURNAL OF MOLECULAR BIOLOGY

Productive association between MHC class I and tapasin requires the tapasin transmembrane/cytosolic region and the tapasin C-terminal Ig-like domain

(2011) Laura C. Simone et al.   MOLECULAR IMMUNOLOGY

Characterization of Structural Features Controlling the Receptiveness of Empty Class II MHC Molecules

(2011) Bernd Rupp et al.   PLoS One

Assessing the Performance of the MM/PBSA and MM/GBSA Methods. 1. The Accuracy of Binding Free Energy Calculations Based on Molecular Dynamics Simulations

(2010) Tingjun Hou et al.   Journal of Chemical Information and Modeling

An interdomain sector mediating allostery in Hsp70 molecular chaperones

(2010) Robert G Smock et al.   Molecular Systems Biology

Predicting Affinity and Specificity of Antigenic Peptide Binding to Major Histocompatibility Class I Molecules

(2009) Florian Sieker et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

Insights into MHC Class I Peptide Loading from the Structure of the Tapasin-ERp57 Thiol Oxidoreductase Heterodimer

(2009) Gang Dong et al.   IMMUNITY

Melan-A/MART1 Analog Peptide Triggers Anti-myeloma T-cells Through Crossreactivity With HM1.24

(2009) Olaf Christensen et al.   JOURNAL OF IMMUNOTHERAPY

Peptide binding to MHC class I and II proteins: New avenues from new methods

(2009) Rakina Yaneva et al.   MOLECULAR IMMUNOLOGY

The Immune Epitope Database 2.0

(2009) Randi Vita et al.   NUCLEIC ACIDS RESEARCH

Flexibility of the MHC class II peptide binding cleft in the bound, partially filled, and empty states: A molecular dynamics simulation study

(2008) Rakina Yaneva et al.   BIOPOLYMERS

Differential tapasin dependence of MHC class I molecules correlates with conformational changes upon peptide dissociation: A molecular dynamics simulation study

(2008) Florian Sieker et al.   MOLECULAR IMMUNOLOGY

HLA-B27 Subtypes Differentially Associated with Disease Exhibit Conformational Differences in Solution

(2007) Heinz Fabian et al.   JOURNAL OF MOLECULAR BIOLOGY