Integrated RNA-Seq and sRNA-Seq Analysis Identifies Chilling and Freezing Responsive Key Molecular Players and Pathways in Tea Plant (Camellia sinensis)

Dynamic expression of novel and conserved microRNAs and their targets in diploid and tetraploid of Paulownia tomentosa

(2014) Guoqiang Fan et al.   BIOCHIMIE

Endogenous small-noncoding RNAs and their roles in chilling response and stress acclimation in Cassava

(2014) Jing Xia et al.   BMC GENOMICS

Deep-sequencing transcriptome analysis of low temperature perception in a desert tree, Populus euphratica

(2014) Jinhuan Chen et al.   BMC GENOMICS

Signalling and responses to strigolactones and karrikins

(2014) Steven M Smith et al.   CURRENT OPINION IN PLANT BIOLOGY

Conserved miR164-targeted NAC genes negatively regulate drought resistance in rice

(2014) Yujie Fang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Differential expression of microRNAs in dormant bud of tea [Camellia sinensis (L.) O. Kuntze]

(2014) Anburaj Jeyaraj et al.   PLANT CELL REPORTS

After-Ripening Induced Transcriptional Changes of Hormonal Genes in Wheat Seeds: The Cases of Brassinosteroids, Ethylene, Cytokinin and Salicylic Acid

(2014) Vijaya R. Chitnis et al.   PLoS One

A Genome-Wide Perspective of miRNAome in Response to High Temperature, Salinity and Drought Stresses in Brassica juncea (Czern) L

(2014) Ankur R. Bhardwaj et al.   PLoS One

Crosstalk between secondary messengers, hormones and MAPK modules during abiotic stress signalling in plants

(2013) Veronika Smékalová et al.   BIOTECHNOLOGY ADVANCES

Inferring microRNA and transcription factor regulatory networks in heterogeneous data

(2013) Thuc D Le et al.   BMC BIOINFORMATICS

De novo sequencing and transcriptome analysis of the desert shrub, Ammopiptanthus mongolicus, during cold acclimation using Illumina/Solexa

(2013) Tao Pang et al.   BMC GENOMICS

De novo characterization of the Anthurium transcriptome and analysis of its digital gene expression under cold stress

(2013) Dan-Qing Tian et al.   BMC GENOMICS

Global transcriptome profiles of Camellia sinensis during cold acclimation

(2013) Xin-Chao Wang et al.   BMC GENOMICS

The role of rice microRNAs in abiotic stress responses

(2013) Dong-Hoon Jeong et al.   JOURNAL OF PLANT BIOLOGY

Identification of miRNAs and their targets in tea (Camellia sinensis)

(2013) Quan-wu Zhu et al.   Journal of Zhejiang University-SCIENCE B

Overexpression of microRNA319 impacts leaf morphogenesis and leads to enhanced cold tolerance in rice (Oryza sativa L.)

(2013) CHUNHUA YANG et al.   PLANT CELL AND ENVIRONMENT

Transcriptome profiling reveals differential transcript abundance in response to chilling stress in Populus simonii

(2013) Yuepeng Song et al.   PLANT CELL REPORTS

Heat stress induction ofmiR398triggers a regulatory loop that is critical for thermotolerance in Arabidopsis

(2013) Qingmei Guan et al.   PLANT JOURNAL

Post-translational regulation of cold acclimation response

(2013) Javier Barrero-Gil et al.   PLANT SCIENCE

Global Analysis of Transcriptome Responses and Gene Expression Profiles to Cold Stress of Jatropha curcas L.

(2013) Haibo Wang et al.   PLoS One

Roles of NAC transcription factors in the regulation of biotic and abiotic stress responses in plants

(2013) Mohammed Nuruzzaman et al.   Frontiers in Microbiology

miREvo: an integrative microRNA evolutionary analysis platform for next-generation sequencing experiments

(2012) Ming Wen et al.   BMC BIOINFORMATICS

Genome wide identification of chilling responsive microRNAs in Prunus persica

(2012) Abdelali Barakat et al.   BMC GENOMICS

Deep-sequencing transcriptome analysis of chilling tolerance mechanisms of a subnival alpine plant, Chorispora bungeana

(2012) Zhiguang Zhao et al.   BMC PLANT BIOLOGY

miRNA regulation in the early development of barley seed

(2012) Julien Curaba et al.   BMC PLANT BIOLOGY

PsRobot: a web-based plant small RNA meta-analysis toolbox

(2012) Hua-Jun Wu et al.   NUCLEIC ACIDS RESEARCH

Functional roles of the protein phosphatase 2C, AtAIP1, in abscisic acid signaling and sugar tolerance in Arabidopsis

(2012) Chae Woo Lim et al.   PLANT SCIENCE

Identification of Soybean MicroRNAs Involved in Soybean Cyst Nematode Infection by Deep Sequencing

(2012) Xiaoyan Li et al.   PLoS One

The role of WRKY transcription factors in plant abiotic stresses

(2011) Ligang Chen et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Hormone balance and abiotic stress tolerance in crop plants

(2011) Zvi Peleg et al.   CURRENT OPINION IN PLANT BIOLOGY

Genome-wide characterization of new and drought stress responsive microRNAs in Populus euphratica

(2011) Bosheng Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

Characterization of novel small RNAs from tea (Camellia sinensis L.)

(2011) Prashant Mohanpuria et al.   MOLECULAR BIOLOGY REPORTS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

Deep sequencing of grapevine flower and berry short RNA library for discovery of novel microRNAs and validation of precise sequences of grapevine microRNAs deposited in miRBase

(2011) Chen Wang et al.   PHYSIOLOGIA PLANTARUM

CsICE1 and CsCBF1: two transcription factors involved in cold responses in Camellia sinensis

(2011) Yu Wang et al.   PLANT CELL REPORTS

Genome-wide analysis of the beta-glucosidase gene family in maize (Zea mays L. var B73)

(2011) Gracia Gómez-Anduro et al.   PLANT MOLECULAR BIOLOGY

The Role of MicroRNAs in Phosphorus Deficiency Signaling

(2011) H.-F. Kuo et al.   PLANT PHYSIOLOGY

Regulation of multiple aquaporin genes in Arabidopsis by a pair of recently duplicated DREB transcription factors

(2011) Liina Rae et al.   PLANTA

Integration of low temperature and light signaling during cold acclimation response in Arabidopsis

(2011) R. Catala et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Posttranscriptional Upregulation by MicroRNAs

(2011) Shobha Vasudevan   Wiley Interdisciplinary Reviews-RNA

A novel cold-regulated gene from Camellia sinensis , CsCOR1 , enhances salt- and dehydration-tolerance in tobacco

(2010) Xian-Wen Li et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Transcriptome analysis of germinating maize kernels exposed to smoke-water and the active compound KAR1

(2010) Vilmos Soós et al.   BMC PLANT BIOLOGY

A Subset of Cytokinin Two-component Signaling System Plays a Role in Cold Temperature Stress Response inArabidopsis

(2010) Jin Jeon et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Analysis of the Cold-Responsive Transcriptome in the Mature Pollen of Arabidopsis

(2010) Zou Changsong et al.   JOURNAL OF PLANT BIOLOGY

Advancing RNA-Seq analysis

(2010) Brian J Haas et al.   NATURE BIOTECHNOLOGY

Karrikins enhance light responses during germination and seedling development in Arabidopsis thaliana

(2010) D. C. Nelson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Computational Identification of miRNAs and Their Target Genes from Expressed Sequence Tags of Tea (Camellia sinensis)

(2010) G.R. Prabu et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Transcript profiling reveals diverse roles of auxin-responsive genes during reproductive development and abiotic stress in rice

(2009) Mukesh Jain et al.   FEBS Journal

Reactive oxygen species, antioxidants and signaling in plants

(2009) Parvaiz Ahmad et al.   JOURNAL OF PLANT BIOLOGY

Identification and expression profiling analysis of TIFY family genes involved in stress and phytohormone responses in rice

(2009) Haiyan Ye et al.   PLANT MOLECULAR BIOLOGY

Trifurcate Feed-Forward Regulation of Age-Dependent Cell Death Involving miR164 in Arabidopsis

(2009) J. H. Kim et al.   SCIENCE

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa

(2008) R. D. Morin et al.   GENOME RESEARCH

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH

Stress-responsive microRNAs inPopulus

(2008) Shanfa Lu et al.   PLANT JOURNAL

Identification of Genes Induced in Response to Low-Temperature Treatment in Tea Leaves

(2008) Lei Wang et al.   PLANT MOLECULAR BIOLOGY REPORTER

Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana

(2008) H.-H. Liu et al.   RNA