The Intraperitoneal Transcriptome of the Opportunistic Pathogen Enterococcus faecalis in Mice

Transcriptome analysis of Enterococcus faecalis toward its adaption to surviving in the mouse intestinal tract

(2014) Angela G. Lindenstrauß et al.   ARCHIVES OF MICROBIOLOGY

Transcriptome Analysis of Enterococcus faecalis during Mammalian Infection Shows Cells Undergo Adaptation and Exist in a Stringent Response State

(2014) Kristi L. Frank et al.   PLoS One

Iron/sulfur proteins biogenesis in prokaryotes: Formation, regulation and diversity

(2013) Béatrice Roche et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Genomic transition of enterococci from gut commensals to leading causes of multidrug-resistant hospital infection in the antibiotic era

(2013) Michael S Gilmore et al.   CURRENT OPINION IN MICROBIOLOGY

Redox Balance via Lactate Dehydrogenase Is Important for Multiple Stress Resistance and Virulence in Enterococcus faecalis

(2013) Nosheen Fatima Rana et al.   INFECTION AND IMMUNITY

A LacI-Family Regulator Activates Maltodextrin Metabolism of Enterococcus faecium

(2013) Xinglin Zhang et al.   PLoS One

The Complete Campylobacter jejuni Transcriptome during Colonization of a Natural Host Determined by RNAseq

(2013) Michael E. Taveirne et al.   PLoS One

The Listeria monocytogenes ChiA Chitinase Enhances Virulence through Suppression of Host Innate Immunity

(2013) S. Chaudhuri et al.   mBio

Enterococcus faecalis Prophage Dynamics and Contributions to Pathogenic Traits

(2013) Renata C. Matos et al.   PLoS Genetics

Structure, Function, and Biology of the Enterococcus faecalis Cytolysin

(2013) Daria Van Tyne et al.   Toxins

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Antimicrobial-Resistant Pathogens Associated with Healthcare-Associated Infections Summary of Data Reported to the National Healthcare Safety Network at the Centers for Disease Control and Prevention, 2009–2010

(2012) Dawn M. Sievert et al.   INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY

Proteomic analysis of spontaneous mutants ofLactococcus lactis: Involvement of GAPDH and arginine deiminase pathway in H2O2resistance

(2012) Tatiana Rochat et al.   PROTEOMICS

Enterococcus faecalis SufU scaffold protein enhances SufS desulfurase activity by acquiring sulfur from its cysteine-153

(2011) Gustavo P. Riboldi et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

RNA-Seq-Based Monitoring of Infection-Linked Changes in Vibrio cholerae Gene Expression

(2011) Anjali Mandlik et al.   Cell Host & Microbe

Differential expression in RNA-seq: A matter of depth

(2011) S. Tarazona et al.   GENOME RESEARCH

The Fsr Quorum-Sensing System of Enterococcus faecalisModulates Surface Display of the Collagen-Binding MSCRAMM Ace through Regulation of gelE

(2011) K. L. Pinkston et al.   JOURNAL OF BACTERIOLOGY

Characterization of the Chitinolytic Machinery of Enterococcus faecalis V583 and High-Resolution Structure of Its Oxidative CBM33 Enzyme

(2011) Gustav Vaaje-Kolstad et al.   JOURNAL OF MOLECULAR BIOLOGY

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Advances in bacterial transcriptome and transposon insertion-site profiling using second-generation sequencing

(2011) Melanie Febrer et al.   TRENDS IN BIOTECHNOLOGY

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

clpB, a class III heat-shock gene regulated by CtsR, is involved in thermotolerance and virulence of Enterococcus faecalis

(2010) N. E. M. de Oliveira et al.   MICROBIOLOGY-SGM

The primary transcriptome of the major human pathogen Helicobacter pylori

(2010) Cynthia M. Sharma et al.   NATURE

Carbon metabolism of intracellular bacterial pathogens and possible links to virulence

(2010) Wolfgang Eisenreich et al.   NATURE REVIEWS MICROBIOLOGY

Maltose and Maltodextrin Utilization by Listeria monocytogenes Depend on an Inducible ABC Transporter which Is Repressed by Glucose

(2010) Shubha Gopal et al.   PLoS One

Screening of In Vivo Activated Genes in Enterococcus faecalis during Insect and Mouse Infections and Growth in Urine

(2010) Aurelie Hanin et al.   PLoS One

Importance of the Collagen Adhesin Ace in Pathogenesis and Protection against Enterococcus faecalis Experimental Endocarditis

(2010) Kavindra V. Singh et al.   PLoS Pathogens

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Glycerol Is Metabolized in a Complex and Strain-Dependent Manner in Enterococcus faecalis

(2009) A. Bizzini et al.   JOURNAL OF BACTERIOLOGY

Deep sequencing-based discovery of the Chlamydia trachomatis transcriptome

(2009) Marco Albrecht et al.   NUCLEIC ACIDS RESEARCH

Mapping the Burkholderia cenocepacia niche response via high-throughput sequencing

(2009) D. R. Yoder-Himes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

LPxTG surface proteins of enterococci

(2009) Antoni P.A. Hendrickx et al.   TRENDS IN MICROBIOLOGY

An AraC-Type Transcriptional Regulator Encoded on the Enterococcus faecalis Pathogenicity Island Contributes to Pathogenesis and Intracellular Macrophage Survival

(2008) P. S. Coburn et al.   INFECTION AND IMMUNITY

Neutrophils Are Essential for Rapid Clearance of Enterococcus faecium in Mice

(2008) M. Leendertse et al.   INFECTION AND IMMUNITY

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY