A de novo Assembly of the Common Frog (Rana temporaria) Transcriptome and Comparison of Transcription Following Exposure to Ranavirus and Batrachochytrium dendrobatidis

Collapse of Amphibian Communities Due to an Introduced Ranavirus

(2014) Stephen J. Price et al.   CURRENT BIOLOGY

Conservation and divergence in the frog immunome: pyrosequencing and de novo assembly of immune tissue transcriptomes

(2014) Anna E. Savage et al.   GENE

More than Skin Deep: Functional Genomic Basis for Resistance to Amphibian Chytridiomycosis

(2014) Amy R. Ellison et al.   Genome Biology and Evolution

Assessing Risk and Guidance on Monitoring ofBatrachochytrium dendrobatidisin Europe through Identification of Taxonomic Selectivity of Infection

(2013) VOJTECH BALÁŽ et al.   CONSERVATION BIOLOGY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

The Invasive Chytrid Fungus of Amphibians Paralyzes Lymphocyte Responses

(2013) J. S. Fites et al.   SCIENCE

IFN-Inducible GTPases in Host Cell Defense

(2012) Bae-Hoon Kim et al.   Cell Host & Microbe

Only skin deep: shared genetic response to the deadly chytrid fungus in susceptible frog species

(2012) ERICA BREE ROSENBLUM et al.   MOLECULAR ECOLOGY

Immune Evasion Strategies of Ranaviruses and Innate Immune Responses to These Emerging Pathogens

(2012) Leon Grayfer et al.   Viruses-Basel

The endosome–lysosome pathway and information generation in the immune system

(2011) Colin Watts   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Cytokine release from innate immune cells: association with diverse membrane trafficking pathways

(2011) P. Lacy et al.   BLOOD

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges

(2011) S. Powell et al.   NUCLEIC ACIDS RESEARCH

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Multiple emergences of genetically diverse amphibian-infecting chytrids include a globalized hypervirulent recombinant lineage

(2011) R. A. Farrer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MHC genotypes associate with resistance to a frog-killing fungus

(2011) A. E. Savage et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Antiviral Immunity in Amphibians

(2011) Guangchun Chen et al.   Viruses-Basel

Ecopathology of Ranaviruses Infecting Amphibians

(2011) Debra Miller et al.   Viruses-Basel

Assessing the long-term impact of Ranavirus infection in wild common frog populations

(2010) A. G. F. Teacher et al.   ANIMAL CONSERVATION

Antiviral protection following immunization correlates with humoral but not cell-mediated immunity

(2010) Vijay Panchanathan et al.   IMMUNOLOGY AND CELL BIOLOGY

Innate Immune Responses and Permissiveness to Ranavirus Infection of Peritoneal Leukocytes in the Frog Xenopus laevis

(2010) H. D. Morales et al.   JOURNAL OF VIROLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Chytridiomycosis, Amphibian Extinctions, and Lessons for the Prevention of Future Panzootics

(2009) Kerry M. Kriger et al.   EcoHealth

Evidence for Multiple Recent Host Species Shifts among the Ranaviruses (Family Iridoviridae)

(2009) J. K. Jancovich et al.   JOURNAL OF VIROLOGY

Evidence for Directional Selection at a Novel Major Histocompatibility Class I Marker in Wild Common Frogs (Rana temporaria) Exposed to a Viral Pathogen (Ranavirus)

(2009) Amber G. F. Teacher et al.   PLoS One

Expression Profiling the Temperature-Dependent Amphibian Response to Infection by Batrachochytrium dendrobatidis

(2009) Laia Ribas et al.   PLoS One

Pathogenesis of Chytridiomycosis, a Cause of Catastrophic Amphibian Declines

(2009) J. Voyles et al.   SCIENCE

Transcriptional response of Mexican axolotls to Ambystoma tigrinum virus (ATV) infection

(2008) Jennifer D Cotter et al.   BMC GENOMICS

Experimental Evidence that Amphibian Ranaviruses Are Multi-Host Pathogens

(2008) Danna M. Schock et al.   COPEIA

Assessing the gene space in draft genomes

(2008) Genis Parra et al.   NUCLEIC ACIDS RESEARCH

Are we in the midst of the sixth mass extinction? A view from the world of amphibians

(2008) D. B. Wake et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA