Isolation of Specific Neurons from C. elegans Larvae for Gene Expression Profiling

Simultaneous optogenetic manipulation and calcium imaging in freely moving C. elegans

(2014) Frederick B. Shipley et al.   Frontiers in Neural Circuits

The LIM and POU homeobox genes ttx-3 and unc-86 act as terminal selectors in distinct cholinergic and serotonergic neuron types

(2013) F. Zhang et al.   DEVELOPMENT

Serotonergic Neurosecretory Synapse Targeting Is Controlled by Netrin-Releasing Guidepost Neurons in Caenorhabditis elegans

(2013) J. C. Nelson et al.   JOURNAL OF NEUROSCIENCE

Comparative analysis of RNA sequencing methods for degraded or low-input samples

(2013) Xian Adiconis et al.   NATURE METHODS

Sensory Neuron Fates Are Distinguished by a Transcriptional Switch that Regulates Dendrite Branch Stabilization

(2013) Cody J. Smith et al.   NEURON

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Optogenetic Analysis of a Nociceptor Neuron and Network Reveals Ion Channels Acting Downstream of Primary Sensors

(2012) Steven J. Husson et al.   CURRENT BIOLOGY

Cell-type-specific nuclei purification from whole animals for genome-wide expression and chromatin profiling

(2012) F. A. Steiner et al.   GENOME RESEARCH

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Analysis of C. elegans intestinal gene expression and polyadenylation by fluorescence-activated nuclei sorting and 3′-end-seq

(2012) Simon Haenni et al.   NUCLEIC ACIDS RESEARCH

Functional transcriptomics of a migrating cell in Caenorhabditis elegans

(2012) E. M. Schwarz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Connectome of a Decision-Making Neural Network

(2012) T. A. Jarrell et al.   SCIENCE

Differentiation of Carbon Dioxide-Sensing Neurons inCaenorhabditiselegansRequires the ETS-5 Transcription Factor

(2011) Manon L. Guillermin et al.   GENETICS

A Transcriptional Program Promotes Remodeling of GABAergic Synapses in Caenorhabditis elegans

(2011) S. C. Petersen et al.   JOURNAL OF NEUROSCIENCE

Isolation and Culture of Larval Cells from C. elegans

(2011) Sihui Zhang et al.   PLoS One

Structural Properties of the Caenorhabditis elegans Neuronal Network

(2011) Lav R. Varshney et al.   PLoS Computational Biology

Normalization of genomic DNA using duplex-specific nuclease

(2010) Irina Shagina et al.   BIOTECHNIQUES

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

(2010) James H Bullard et al.   BMC BIOINFORMATICS

The HMX/NKX homeodomain protein MLS-2 specifies the identity of the AWC sensory neuron type via regulation of the ceh-36 Otx gene in C. elegans

(2010) K. Kim et al.   DEVELOPMENT

Time-lapse imaging and cell-specific expression profiling reveal dynamic branching and molecular determinants of a multi-dendritic nociceptor in C. elegans

(2010) Cody J. Smith et al.   DEVELOPMENTAL BIOLOGY

A spatial and temporal map of C. elegans gene expression

(2010) W. C. Spencer et al.   GENOME RESEARCH

Specific roles for DEG/ENaC and TRP channels in touch and thermosensation in C. elegans nociceptors

(2010) Marios Chatzigeorgiou et al.   NATURE NEUROSCIENCE

Receptor-type guanylate cyclase is required for carbon dioxide sensation by Caenorhabditis elegans

(2010) E. A. Hallem et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project

(2010) M. B. Gerstein et al.   SCIENCE

An Integrated Strategy to Study Muscle Development and Myofilament Structure in Caenorhabditis elegans

(2009) Barbara Meissner et al.   PLoS Genetics

Complementary RNA amplification methods enhance microarray identification of transcripts expressed in the C. elegans nervous system

(2008) Joseph D Watson et al.   BMC GENOMICS