Computational Prediction of Candidate Proteins for S-Nitrosylation in Arabidopsis thaliana

S-nitrosylation influences the structure and DNA binding activity of AtMYB30 transcription factor from Arabidopsis thaliana

(2014) Carolina Pereira Tavares et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

S-nitrosylation of TRIM72 at cysteine 144 is critical for protection against oxidation-induced protein degradation and cell death

(2014) Mark J. Kohr et al.   JOURNAL OF MOLECULAR AND CELLULAR CARDIOLOGY

S-Nitrosylation Analysis in Brassica juncea Apoplast Highlights the Importance of Nitric Oxide in Cold-Stress Signaling

(2014) Ankita Sehrawat et al.   JOURNAL OF PROTEOME RESEARCH

Action and target sites of nitric oxide in chloroplasts

(2014) Amarendra N. Misra et al.   NITRIC OXIDE-BIOLOGY AND CHEMISTRY

Incorporating substrate sequence motifs and spatial amino acid composition to identify kinase-specific phosphorylation sites on protein three-dimensional structures

(2013) Min-Gang Su et al.   BMC BIOINFORMATICS

Protein tyrosine nitration in pea roots during development and senescence

(2013) Juan C. Begara-Morales et al.   JOURNAL OF EXPERIMENTAL BOTANY

High-Resolution Crystal Structure and Redox Properties of Chloroplastic Triosephosphate Isomerase from Chlamydomonas reinhardtii

(2013) Mirko Zaffagnini et al.   Molecular Plant

Chloroplast functionality has a positive effect on nitric oxide level in soybean cotyledons

(2013) Andrea Galatro et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

iSNO-PseAAC: Predict Cysteine S-Nitrosylation Sites in Proteins by Incorporating Position Specific Amino Acid Propensity into Pseudo Amino Acid Composition

(2013) Yan Xu et al.   PLoS One

Bioinformatics analysis reveals biophysical and evolutionary insights into the 3-nitrotyrosine post-translational modification in the human proteome

(2013) J. Y. Ng et al.   Open Biology

iSNO-AAPair: incorporating amino acid pairwise coupling into PseAAC for predicting cysteineS-nitrosylation sites in proteins

(2013) Yan Xu et al.   PeerJ

Nitric oxide inhibits the ATPase activity of the chaperone-like AAA+ ATPase CDC48, a target for S-nitrosylation in cryptogein signalling in tobacco cells

(2012) Jéremy Astier et al.   BIOCHEMICAL JOURNAL

ROS homeostasis during development: an evolutionary conserved strategy

(2012) Jos H. M. Schippers et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Protein S-nitrosylation: What's going on in plants?

(2012) Jéremy Astier et al.   FREE RADICAL BIOLOGY AND MEDICINE

S-Nitrosylated proteins in pea (Pisum sativum L.) leaf peroxisomes: changes under abiotic stress

(2012) Ana P. Ortega-Galisteo et al.   JOURNAL OF EXPERIMENTAL BOTANY

Salinity-induced changes in S-nitrosylation of pea mitochondrial proteins

(2012) Daymi Camejo et al.   Journal of Proteomics

Systematic Analysis of Protein Phosphorylation Networks From Phosphoproteomic Data

(2012) Chunxia Song et al.   MOLECULAR & CELLULAR PROTEOMICS

Proteomic analysis of S-nitrosylated proteins in potato plant

(2012) Hiroaki Kato et al.   PHYSIOLOGIA PLANTARUM

Endogenous nitric oxide generation in protoplast chloroplasts

(2012) Rajesh Kumar Tewari et al.   PLANT CELL REPORTS

Oxidative and nitrosative-based signaling and associated post-translational modifications orchestrate the acclimation of citrus plants to salinity stress

(2012) Georgia Tanou et al.   PLANT JOURNAL

Looking Deep Inside: Detection of Low-Abundance Proteins in Leaf Extracts of Arabidopsis and Phloem Exudates of Pumpkin

(2012) A. Frohlich et al.   PLANT PHYSIOLOGY

AtGSNOR1 function is required for multiple developmental programs in Arabidopsis

(2012) Eunjung Kwon et al.   PLANTA

Characterization and Prediction of Protein Phosphorylation Hotspots in Arabidopsis thaliana

(2012) Jan-Ole Christian et al.   Frontiers in Plant Science

Proteomic analysis of Arabidopsis protein S-nitrosylation in response to inoculation with Pseudomonas syringae

(2011) Ana M. Maldonado-Alconada et al.   ACTA PHYSIOLOGIAE PLANTARUM

Proteomics investigation of endogenous S-nitrosylation in Arabidopsis

(2011) Abasse Fares et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

GPS-YNO2: computational prediction of tyrosine nitration sites in proteins

(2011) Zexian Liu et al.   Molecular BioSystems

S-nitrosylation of NADPH oxidase regulates cell death in plant immunity

(2011) Byung-Wook Yun et al.   NATURE

Nitric oxide influences auxin signaling through S-nitrosylation of the Arabidopsis TRANSPORT INHIBITOR RESPONSE 1 auxin receptor

(2011) María C. Terrile et al.   PLANT JOURNAL

Nitric Oxide and Protein S-Nitrosylation Are Integral to Hydrogen Peroxide-Induced Leaf Cell Death in Rice

(2011) A. Lin et al.   PLANT PHYSIOLOGY

Regulation of plant cytosolic aldolase functions by redox-modifications

(2011) Karina van der Linde et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

The role of nitric oxide in the germination of plant seeds and pollen

(2011) Jana Šírová et al.   PLANT SCIENCE

SNOSite: Exploiting Maximal Dependence Decomposition to Identify Cysteine S-Nitrosylation with Substrate Site Specificity

(2011) Tzong-Yi Lee et al.   PLoS One

Discrete Redox Signaling Pathways Regulate Photosynthetic Light-Harvesting and Chloroplast Gene Transcription

(2011) John F. Allen et al.   PLoS One

Proteomic analysis of defense response of wildtype Arabidopsis thaliana and plants with impaired NO- homeostasis

(2011) Christian Holzmeister et al.   PROTEOMICS

Site-Specific Proteomics Approach for Study Protein S-Nitrosylation

(2010) Miao Liu et al.   ANALYTICAL CHEMISTRY

Mechanical wounding induces a nitrosative stress by down-regulation of GSNO reductase and an increase in S-nitrosothiols in sunflower (Helianthus annuus) seedlings

(2010) Mounira Chaki et al.   JOURNAL OF EXPERIMENTAL BOTANY

S-Alkylating Labeling Strategy for Site-Specific Identification of theS-Nitrosoproteome

(2010) Yi-Ju Chen et al.   JOURNAL OF PROTEOME RESEARCH

Auxin-Mediated Ribosomal Biogenesis Regulates Vacuolar Trafficking in Arabidopsis

(2010) A. Rosado et al.   PLANT CELL

Redox Regulation of the NPR1-TGA1 System of Arabidopsis thaliana by Nitric Oxide

(2010) C. Lindermayr et al.   PLANT CELL

Ribosomal protein L27a is required for growth and patterning in Arabidopsis thaliana

(2010) Dóra Szakonyi et al.   PLANT JOURNAL

Plant L10 Ribosomal Proteins Have Different Roles during Development and Translation under Ultraviolet-B Stress

(2010) M. L. F. Ferreyra et al.   PLANT PHYSIOLOGY

Regulation of Plant Glycine Decarboxylase by S-Nitrosylation and Glutathionylation

(2010) M. C. Palmieri et al.   PLANT PHYSIOLOGY

GPS-SNO: Computational Prediction of Protein S-Nitrosylation Sites with a Modified GPS Algorithm

(2010) Yu Xue et al.   PLoS One

Structural profiling of endogenous S-nitrosocysteine residues reveals unique features that accommodate diverse mechanisms for protein S-nitrosylation

(2010) P.-T. Doulias et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural Analysis of Cysteine S-Nitrosylation: A Modified Acid-Based Motif and the Emerging Role of Trans-Nitrosylation

(2009) Stefano M. Marino et al.   JOURNAL OF MOLECULAR BIOLOGY

The redox switch: dynamic regulation of protein function by cysteine modifications

(2009) Davide Spadaro et al.   PHYSIOLOGIA PLANTARUM

Coordination of cell proliferation and cell expansion mediated by ribosome-related processes in the leaves ofArabidopsis thaliana

(2009) Ushio Fujikura et al.   PLANT JOURNAL

Proteomics reveals the overlapping roles of hydrogen peroxide and nitric oxide in the acclimation of citrus plants to salinity

(2009) Georgia Tanou et al.   PLANT JOURNAL

Systematic study of protein sumoylation: Development of a site-specific predictor of SUMOsp 2.0

(2009) Jian Ren et al.   PROTEOMICS

Differential modulation of S-nitrosoproteome of Brassica juncea by low temperature: Change in S-nitrosylation of Rubisco is responsible for the inactivation of its carboxylase activity

(2009) Jasmeet Kaur Abat et al.   PROTEOMICS

S-Nitrosylation of Drp1 Mediates β-Amyloid-Related Mitochondrial Fission and Neuronal Injury

(2009) Dong-Hyung Cho et al.   SCIENCE

Ribosomal proteins promote leaf adaxial identity

(2008) Y. Yao et al.   DEVELOPMENT

Three PIGGYBACK genes that specifically influence leaf patterning encode ribosomal proteins

(2008) V. Pinon et al.   DEVELOPMENT

S-nitrosylated proteins of a medicinal CAM plant Kalanchoe pinnata- ribulose-1,5-bisphosphate carboxylase/oxygenase activity targeted for inhibition

(2008) Jasmeet K. Abat et al.   FEBS Journal

S-Nitrosylation of AtSABP3 Antagonizes the Expression of Plant Immunity

(2008) Yi-Qin Wang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

CysteineS-Nitrosylation Protects Protein-tyrosine Phosphatase 1B against Oxidation-induced Permanent Inactivation

(2008) Yi-Yun Chen et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

GPS 2.0, a Tool to Predict Kinase-specific Phosphorylation Sites in Hierarchy

(2008) Yu Xue et al.   MOLECULAR & CELLULAR PROTEOMICS

Regulation of plant cytosolic glyceraldehyde 3-phosphate dehydrogenase isoforms by thiol modifications

(2008) Simone Holtgrefe et al.   PHYSIOLOGIA PLANTARUM

Involvement of Reactive Nitrogen and Oxygen Species (RNS and ROS) in Sunflower–Mildew Interaction

(2008) Mounira Chaki et al.   PLANT AND CELL PHYSIOLOGY

Metabolism of Reactive Nitrogen Species in Pea Plants Under Abiotic Stress Conditions

(2008) F. J. Corpas et al.   PLANT AND CELL PHYSIOLOGY

CSS-Palm 2.0: an updated software for palmitoylation sites prediction

(2008) J. Ren et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Proteomic analysis of S-nitrosylated proteins inArabidopsis thaliana undergoing hypersensitive response

(2008) Maria C. Romero-Puertas et al.   PROTEOMICS

Plant Immunity Requires Conformational Charges of NPR1 via S-Nitrosylation and Thioredoxins

(2008) Y. Tada et al.   SCIENCE

S-Nitrosylation of Surfactant Protein-D Controls Inflammatory Function

(2008) Chang-Jiang Guo et al.   PLOS BIOLOGY