Molecular Phylogenetics and Systematics of the Bivalve Family Ostreidae Based on rRNA Sequence-Structure Models and Multilocus Species Tree

ITS2, 18S, 16S or any other RNA — simply aligning sequences and their individual secondary structures simultaneously by an automatic approach

(2014) Matthias Wolf et al.   GENE

Revision of genus Crassostrea (Bivalvia: Ostreidae) of Brazil

(2014) Vanessa Simão Do Amaral et al.   JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular phylogenetics in 2D: ITS2 rRNA evolution and sequence-structure barcode from Veneridae to Bivalvia

(2012) Daniele Salvi et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

ITS2 Database IV: Interactive taxon sampling for internal transcribed spacer 2 based phylogenies

(2012) Christian Koetschan et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

‘Y’Scenedesmus(Chlorophyta, Chlorophyceae): the internal transcribed spacer 2 rRNA secondary structure re-revisited

(2012) S. M. Markert et al.   PLANT BIOLOGY

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Unusual conservation of mitochondrial gene order in Crassostrea oysters: evidence for recent speciation in Asia

(2011) Jianfeng Ren et al.   BMC EVOLUTIONARY BIOLOGY

Identifying the true oysters (Bivalvia: Ostreidae) with mitochondrial phylogeny and distance-based DNA barcoding

(2011) JUN LIU et al.   Molecular Ecology Resources

Internal Transcribed Spacer 2 (nu ITS2 rRNA) Sequence-Structure Phylogenetics: Towards an Automated Reconstruction of the Green Algal Tree of Life

(2011) Mark A. Buchheim et al.   PLoS One

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees

(2010) Alexander Keller et al.   Biology Direct

RNAstructure: software for RNA secondary structure prediction and analysis

(2010) Jessica S Reuter et al.   BMC BIOINFORMATICS

The integrative future of taxonomy

(2010) Jose M. Padial et al.   Frontiers in Zoology

Molecular identification, phylogeny and geographic distribution of Brazilian mangrove oysters (Crassostrea)

(2010) Aline Grasielle Costa de Melo et al.   GENETICS AND MOLECULAR BIOLOGY

The analysis of rRNA sequence-structure in phylogenetics: An application to the family Pectinidae (Mollusca: Bivalvia)

(2010) Daniele Salvi et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Crassostrea gigas in natural oyster banks in southern Brazil

(2009) Cláudio M. R. Melo et al.   BIOLOGICAL INVASIONS

ITS2 secondary structure improves phylogeny estimation in a radiation of blue butterflies of the subgenus Agrodiaetus (Lepidoptera: Lycaenidae: Polyommatus )

(2009) Martin Wiemers et al.   BMC EVOLUTIONARY BIOLOGY

Bayesian Inference of Species Trees from Multilocus Data

(2009) J. Heled et al.   MOLECULAR BIOLOGY AND EVOLUTION

ITS2 sequence–structure analysis in phylogenetics: A how-to manual for molecular systematics

(2009) Jörg Schultz et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

ITS2 data corroborate a monophyletic chlorophycean DO-group (Sphaeropleales)

(2008) Alexander Keller et al.   BMC EVOLUTIONARY BIOLOGY

Identification of Crassostrea ariakensis and Related Oysters by Multiplex Species-Specific PCR

(2008) Haiyan Wang et al.   JOURNAL OF SHELLFISH RESEARCH