4.6 Article

Analysis of POFUT1 Gene Mutation in a Chinese Family with Dowling-Degos Disease

Journal

PLOS ONE
Volume 9, Issue 8, Pages -

Publisher

PUBLIC LIBRARY SCIENCE
DOI: 10.1371/journal.pone.0104496

Keywords

-

Funding

  1. Natural Science Foundation of Shandong Province [ZR2011HQ003, ZR2011HQ037]
  2. Project of Taishan scholar
  3. Project of clinical center for Dermatology and Venereology of Shandong Province
  4. Project of Research Foundation of Shandong Provincial Institute of Dermatology and Venereology [2008-7]

Ask authors/readers for more resources

Dowling-Degos disease (DDD) is an autosomal dominant genodermatosis characterized by reticular pigmented anomaly mainly affecting flexures. Though KRT5 has been identified to be the causal gene of DDD, the heterogeneity of this disease was displayed: for example, POFUT1 and POGLUT1 were recently identified and confirmed to be additional pathogenic genes of DDD. To identify other DDD causative genes, we performed genome-wide linkage and exome sequencing analyses in a multiplex Chinese DDD family, in which the KRT5 mutation was absent. Only a novel 1-bp deletion (c.246+5delG) in POFUT1 was found. No other novel mutation or this deletion was detected in POFUT1 in a second DDD family and a sporadic DDD case by Sanger Sequencing. The result shows the genetic-heterogeneity and complexity of DDD and will contribute to the further understanding of DDD genotype/phenotype correlations and to the pathogenesis of this disease.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.6
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Letter Infectious Diseases

Identification of a new HIV-1 intersubtype circulating recombinant form (CRF123_0107) in Hebei province, China

Ying Xing, Lijing Wang, Yating Li, Yuling Wang, Leilei Han, Guiqin Huang, Jingwan Han, Wenjun Zhang, Lei Jia, Yongjian Liu, Xiaolin Wang, Tianyi Li, Jingyun Li, Li Yang, Xiaojing Qu, Yingxia Li, Erhei Dai, Hanping Li, Lin Li

JOURNAL OF INFECTION (2022)

Article Statistics & Probability

Generalized Factor Model for Ultra-High Dimensional Correlated Variables with Mixed Types

Wei Liu, Huazhen Lin, Shurong Zheng, Jin Liu

Summary: This article introduces a generalized factor model, algorithm, and theory for ultra-high dimensional mixed types of variables. The proposed method demonstrates advantages over existing factor models in terms of predictive and interpretable estimators for loadings and factors.

JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION (2023)

Article Statistics & Probability

A Deep Generative Approach to Conditional Sampling

Xingyu Zhou, Yuling Jiao, Jin Liu, Jian Huang

Summary: We propose a deep generative approach to sampling from a conditional distribution, using neural networks for nonparametric estimation. Our method has advantages in handling high-dimensional and continuous/discrete variables, and achieves good results in numerical experiments.

JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION (2023)

Article Medicine, General & Internal

Association of Spinal Cord Stimulator Implantation With Persistent Opioid Use in Patients With Postlaminectomy Syndrome

To-Nhu Vu, Chachrit Khunsriraksakul, Yakov Vorobeychik, Alison Liu, Renan Sauteraud, Ganesh Shenoy, Dajiang J. Liu, Steven P. Cohen

Summary: This study found that under real-life conditions, spinal cord stimulation (SCS) was associated with small, clinically questionable associations with opioid discontinuation and not starting opioids in patients with postlaminectomy syndrome (PLS).

JAMA NETWORK OPEN (2022)

Article Biochemistry & Molecular Biology

Identification of shared loci associated with both Crohn's disease and leprosy in East Asians

Seulgi Jung, Dohoon Park, Ho-Su Lee, Yongjae Kim, Jiwon Baek, Sung Wook Hwang, Sang Hyoung Park, Suk-Kyun Yang, Byong Duk Ye, Buhm Han, Yonghu Sun, Hong Liu, Furen Zhang, Jianjun Liu, Kyuyoung Song

Summary: The study identified shared genetic risk loci between Crohn's disease and leprosy in East Asian populations, indicating a potential genetic correlation. The findings suggest that CD might be caused by hyper-sensitive reactions to pathogenic stimuli.

HUMAN MOLECULAR GENETICS (2022)

Article Endocrinology & Metabolism

Genetic Risk Score for Plasma Uric Acid Levels Is Associated With Early Rapid Kidney Function Decline in Type 2 Diabetes

Resham Lal Gurung, M. Yiamunaa, Jian-Jun Liu, Rajkumar Dorajoo, Jiexun Wang, Ling Wang, Sylvia Liu, Clara Chan, Keven Ang, Yi-Ming Shao, Tavintharan Subramaniam, Wern E. Tang, Chee Fang Sum, Su Chi Lim

Summary: This study found that elevated plasma UA is associated with incident CKD and potentially has a causal role in early eGFR loss in patients with type 2 diabetes.

JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM (2022)

Article Medicine, Research & Experimental

Effects of early rehabilitation on functional outcomes in patients after coronary artery bypass graft surgery: a randomized controlled trial

Peipei Han, Hairui Yu, Fandi Xie, Ming Li, Xiaoyu Chen, Xing Yu, Jing Li, Xiangjing Liu, Bohan Shao, Jianjun Liu, Yaping Liu, Zhigang Liu, Xiaocheng Liu, Qi Guo

Summary: This study evaluated the effectiveness, feasibility, and safety of early rehabilitation for patients after coronary artery bypass graft (CABG) surgery. The results showed that early rehabilitation significantly improved patients' functional independence and did not increase the risk of post-operative complications.

JOURNAL OF INTERNATIONAL MEDICAL RESEARCH (2022)

Article Biology

Functional data analysis with covariate-dependent mean and covariance structures

Chenlin Zhang, Huazhen Lin, Li Liu, Jin Liu, Yi Li

Summary: This article proposes a new functional regression model that links the covariance structures of response curves to external covariates. By allowing the variances of random scores to be dependent on covariates, it identifies eigenfunctions for each individual, resulting in improved interpretability and prediction power. The utility of the developed method is demonstrated through simulations and an analysis of real data concerning parental effects on offspring growth curves, yielding biologically interesting results.

BIOMETRICS (2023)

Article Microbiology

A New HIV-1 K28E32-Reverse Transcriptase Variant Associated with the Rapid Expansion of CRF07_BC among Men Who Have Sex with Men

Jingwan Han, Yan-Heng Zhou, Yingying Ma, Guoxin Zhu, Dong Zhang, Bo Zhu, Tong Cheng, Lanfeng Wang, Jian-Hua Wang, Lin Li, Chiyu Zhang

Summary: A new K28E32 variant of HIV-1 CRF07_BC was identified, showing rapid expansion among MSM and higher in vitro replication ability compared to the wild type.

MICROBIOLOGY SPECTRUM (2022)

Article Immunology

Identification and Characterization of the HERV-K (HML-8) Group of Human Endogenous Retroviruses in the Genome

Mengying Liu, Lei Jia, Xing Guo, Xiuli Zhai, Hanping Li, Yongjian Liu, Jingwan Han, Bohan Zhang, Xiaolin Wang, Tianyi Li, Yanglan Wang, Jingyun Li, Changyuan Yu, Lin Li

Summary: This study provides a comprehensive analysis of the presence and distribution of HERV-K HML-8 sequences within the human genome and hominoids, as well as the characterization of their structure and evolution. The results show that HML-8 elements were integrated into the primate lineage around 35 to 42 million years ago during primates evolutionary speciation. These findings offer a detailed background for future functional studies.

AIDS RESEARCH AND HUMAN RETROVIRUSES (2023)

Article Multidisciplinary Sciences

Genetic diversity fuels gene discovery for tobacco and alcohol use

Gretchen R. B. Saunders, Xingyan Wang, Fang Chen, Seon-Kyeong Jang, Mengzhen Liu, Chen Wang, Shuang Gao, Yu Jiang, Chachrit Khunsriraksakul, Jacqueline M. Otto, Clifton Addison, Masato Akiyama, Christine M. Albert, Fazil Aliev, Alvaro Alonso, Donna K. Arnett, Allison E. Ashley-Koch, Aneel A. Ashrani, Kathleen C. Barnes, R. Graham Barr, Traci M. Bartz, Diane M. Becker, Lawrence F. Bielak, Emelia J. Benjamin, Joshua C. Bis, Gyda Bjornsdottir, John Blangero, Eugene R. Bleecker, Jason D. Boardman, Eric Boerwinkle, Dorret Boomsma, Meher Preethi Boorgula, Donald W. Bowden, Jennifer A. Brody, Brian E. Cade, Daniel Chasman, Sameer Chavan, Yii-Der Ida Chen, Zhengming Chen, Iona Cheng, Michael H. Cho, Helene Choquet, John W. Cole, Marilyn C. Cornelis, Francesco Cucca, Joanne E. Curran, Mariza de Andrade, Danielle M. Dick, Anna R. Docherty, Ravindranath Duggirala, Charles B. Eaton, Marissa A. Ehringer, Tonu Esko, Jessica D. Faul, Lilian Fernandes Silva, Edoardo Fiorillo, Myriam Fornage, Barry Freedman, Maiken E. Gabrielsen, Melanie E. Garrett, Sina A. Gharib, Christian Gieger, Nathan Gillespie, David C. Glahn, Scott D. Gordon, Charles C. Gu, Dongfeng Gu, Daniel F. Gudbjartsson, Xiuqing Guo, Jeffrey Haessler, Michael E. Hall, Toomas Haller, Kathleen Mullan Harris, Jiang He, Pamela Herd, John K. Hewitt, Ian Hickie, Bertha Hidalgo, John E. Hokanson, Christian Hopfer, JoukeJan Hottenga, Lifang Hou, Hongyan Huang, Yi-Jen Hung, David J. Hunter, Kristian Hveem, Shih-Jen Hwang, Chii-Min Hwu, William Iacono, Marguerite R. Irvin, Yon Ho Jee, Eric O. Johnson, Yoonjung Y. Joo, Eric Jorgenson, Anne E. Justice, Yoichiro Kamatani, Robert C. Kaplan, Jaakko Kaprio, Sharon L. R. Kardia, Matthew C. Keller, Tanika N. Kelly, Charles Kooperberg, Tellervo Korhonen, Peter Kraft, Kenneth Krauter, Johanna Kuusisto, Markku Laakso, Jessica Lasky-Su, Wen-Jane Lee, James J. Lee, Daniel Levy, Liming Li, Kevin Li, Yuqing Li, Kuang Lin, Penelope A. Lind, Chunyu Liu, Donald M. Lloyd-Jones, Sharon M. Lutz, Jiantao Ma, Reedik Magi, Ani Manichaikul, Nicholas G. Martin, Ravi Mathur, Nana Matoba, Patrick F. McArdle, Matt McGue, Matthew B. McQueen, Sarah E. Medland, Andres Metspalu, Deborah A. Meyers, Iona Y. Millwood, Braxton D. Mitchell, Karen L. Mohlke, Matthew Moll, May E. Montasser, Alanna C. Morrison, Antonella Mulas, Jonas B. Nielsen, Kari E. North, Elizabeth C. Oelsner, Yukinori Okada, Valeria Orru, Nicholette D. Palmer, Teemu Palviainen, Anita Pandit, S. Lani Park, Ulrike Peters, Annette Peters, Patricia A. Peyser, Tinca J. C. Polderman, Nicholas Rafaels, Susan Redline, Robert M. Reed, Alex P. Reiner, John P. Rice, Stephen S. Rich, Nicole E. Richmond, Carol Roan, Jerome Rotter, Michael N. Rueschman, Valgerdur Runarsdottir, Nancy L. Saccone, David A. Schwartz, Aladdin H. Shadyab, Jingchunzi Shi, Suyash S. Shringarpure, Kamil Sicinski, Anne Heidi Skogholt, Jennifer A. Smith, Nicholas L. Smith, Nona Sotoodehnia, Michael C. Stallings, Hreinn Stefansson, Kari Stefansson, Jerry A. Stitzel, Xiao Sun, Moin Syed, Ruth Tal-Singer, Amy E. Taylor, Kent D. Taylor, Marilyn J. Telen, Khanh K. Thai, Hemant Tiwari, Constance Turman, Thorarinn Tyrfingsson, Tamara L. Wall, Robin G. Walters, David R. Weir, Scott T. Weiss, Wendy B. White, John B. Whitfield, Kerri L. Wiggins, Gonneke Willemsen, Cristen J. Willer, Bendik S. Winsvold, Huichun Xu, Lisa R. Yanek, Jie Yin, Kristin L. Young, Kendra A. Young, Bing Yu, Wei Zhao, Wei Zhou, Sebastian Zollner, Luisa Zuccolo, The Biobank Japan Project, Chiara Batini, Andrew W. Bergen, Laura J. Bierut, Sean P. David, Sarah A. Gagliano Taliun, Dana B. Hancock, Bibo Jiang, Marcus R. Munafo, Thorgeir E. Thorgeirsson, Dajiang J. Liu, Scott Vrieze

Summary: This study utilized global genetic diversity data to discover and fine-map genomic loci associated with tobacco and alcohol use. Ancestry-aware transcriptome-wide association studies were conducted to understand the function of these loci. The study also evaluated the genetic architecture and predictive power of polygenic risk in different populations. The results demonstrated that increasing sample size and genetic diversity improved the identification and fine-mapping of loci, but polygenic risk scores performed poorly across different ancestries.

NATURE (2022)

Article Genetics & Heredity

Multi-ancestry transcriptome-wide association analyses yield insights into tobacco use biology and drug repurposing

Fang Chen, Xingyan Wang, Seon-Kyeong Jang, Bryan C. Quach, J. Dylan Weissenkampen, Chachrit Khunsriraksakul, Lina Yang, Renan Sauteraud, Christine M. Albert, Nicholette D. D. Allred, Donna K. Arnett, Allison E. Ashley-Koch, Kathleen C. Barnes, R. Graham Barr, Diane M. Becker, Lawrence F. Bielak, Joshua C. Bis, John Blangero, Meher Preethi Boorgula, Daniel Chasman, Sameer Chavan, Yii-Der Chen, Lee-Ming Chuang, Adolfo Correa, Joanne E. Curran, Sean P. David, Lisa de Las Fuentes, Ranjan Deka, Ravindranath Duggirala, Jessica D. Faul, Melanie E. Garrett, Sina A. Gharib, Xiuqing Guo, Michael E. Hall, Nicola L. Hawley, Jiang He, Brian D. Hobbs, John E. Hokanson, Chao A. Hsiung, Shih-Jen Hwang, Thomas M. Hyde, Marguerite R. Irvin, Andrew E. Jaffe, Eric O. Johnson, Robert Kaplan, Sharon L. R. Kardia, Joel D. Kaufman, Tanika N. Kelly, Joel E. Kleinman, Charles Kooperberg, I-Te Lee, Daniel Levy, Sharon M. Lutz, Ani W. Manichaikul, Lisa W. Martin, Olivia Marx, Stephen T. McGarvey, Ryan L. Minster, Matthew Moll, Karine A. Moussa, Take Naseri, Kari E. North, Elizabeth C. Oelsner, Juan M. Peralta, Patricia A. Peyser, Bruce M. Psaty, Nicholas Rafaels, Laura M. Raffield, Muagututi'a Sefuiva Reupena, Stephen S. Rich, Jerome Rotter, David A. Schwartz, Aladdin H. Shadyab, Wayne H-H Sheu, Mario Sims, Jennifer A. Smith, Xiao Sun, Kent D. Taylor, Marilyn J. Telen, Harold Watson, Daniel E. Weeks, David R. Weir, Lisa R. Yanek, Kendra A. Young, Kristin L. Young, Wei Zhao, Dana B. Hancock, Bibo Jiang, Scott Vrieze, Dajiang J. Liu

Summary: Most TWASs conducted so far have focused on European ancestry and lacked diversity. To address this limitation, researchers aggregated GWAS summary statistics, whole-genome sequences, and eQTL data from diverse ancestries. They developed a new approach called TESLA, which integrates eQTL datasets with multi-ancestry GWAS, improving power and identifying more genes associated with tobacco use phenotypes compared to alternative TWAS methods. The study also suggests potential drug repurposing options for treating nicotine addiction.

NATURE GENETICS (2023)

Article Microbiology

Limited nucleotide changes of HIV-1 subtype B Rev response element in China affect overall Rev-RRE activity and viral replication

Yuting Shi, Jingwan Han, Bo Zhu, Zhi Liu, Qingmiao Liang, Chunlin Lan, Zhengyang Li, Hanping Li, Yongjian Liu, Lei Jia, Tianyi Li, Xiaolin Wang, Jingyun Li, Bohan Zhang, Junjun Jiang, Lin Li

Summary: This study identifies the subtype-specific loci of HIV-1 subtype B RRE circulating in China and examines their impact on viral replication and Rev-RRE activity.

FRONTIERS IN MICROBIOLOGY (2022)

Article Endocrinology & Metabolism

Increased BMI and late-life mobility dysfunction; overlap of genetic effects in brain regions

Xuling Chang, Kevin Yiqiang Chua, Fang Lin Ng, Ling Wang, Jianjun Liu, Jian-Min Yuan, Chiea-Chuen Khor, Chew-Kiat Heng, Rajkumar Dorajoo, Woon-Puay Koh

Summary: This study investigated the relationship between body mass index (BMI) in midlife and functional mobility in late life. The results showed a causal effect of obesity on mobility dysfunction, with high BMI leading to poorer performance in the Timed Up-and-Go test (TUG). Genetic analyses also indicated potential neuronal dysfunctions in regulating the link between obesity and mobility dysfunction.

INTERNATIONAL JOURNAL OF OBESITY (2023)

Article Chemistry, Multidisciplinary

Lymphocyte Membrane- and 12p1-Dual-Functionalized Nanoparticles for Free HIV-1 Trapping and Precise siRNA Delivery into HIV-1-Infected Cells

Jinbang Zhang, Jingwan Han, Hui Li, Zhengyang Li, Pengfei Zou, Jiaxin Li, Te Zhao, Junwei Che, Yang Yang, Meiyan Yang, Yuli Wang, Wei Gong, Zhiping Li, Lin Li, Chunsheng Gao, Haihua Xiao

Summary: A new system is constructed by functionalizing siRNA delivery lipid nanoparticles with the lymphocyte membrane and 12p1, which can escape immune recognition, has HIV-1 neutralizing capacity, and the ability to deliver siRNA specifically into HIV-1-infected cells. This system can escape uptake by the mononuclear phagocyte system, exhibits strong binding ability with gp120, and shows significant gene silencing effect on HIV-1-infected cells.

ADVANCED SCIENCE (2023)

No Data Available