Global Analysis of the HrpL Regulon in the Plant Pathogen Pseudomonas syringae pv. tomato DC3000 Reveals New Regulon Members with Diverse Functions

Variable Suites of Non-effector Genes Are Co-regulated in the Type III Secretion Virulence Regulon across the Pseudomonas syringae Phylogeny

(2014) Tatiana S. Mucyn et al.   PLoS Pathogens

Regulons of Three Pseudomonas syringae pv. tomato DC3000 Iron Starvation Sigma Factors

(2012) Eric Markel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Plant–bacterial pathogen interactions mediated by type III effectors

(2012) Feng Feng et al.   CURRENT OPINION IN PLANT BIOLOGY

Characterization of the RpoN regulon reveals differential regulation of T6SS and new flagellar operons in Vibrio cholerae O37 strain V52

(2012) Tao G. Dong et al.   NUCLEIC ACIDS RESEARCH

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

Functional and Computational Analysis of Amino Acid Patterns Predictive of Type III Secretion System Substrates in Pseudomonas syringae

(2012) Lisa M. Schechter et al.   PLoS One

Catch me if you can: bacterial effectors and plant targets

(2012) Laurent Deslandes et al.   TRENDS IN PLANT SCIENCE

Comprehensive Genome-wide Protein-DNA Interactions Detected at Single-Nucleotide Resolution

(2011) Ho Sung Rhee et al.   CELL

An Extracytoplasmic Function Sigma Factor-Mediated Cell Surface Signaling System in Pseudomonas syringae pv. tomato DC3000 Regulates Gene Expression in Response to Heterologous Siderophores

(2011) E. Markel et al.   JOURNAL OF BACTERIOLOGY

Characterization of the Fur Regulon in Pseudomonas syringae pv. tomato DC3000

(2011) B. G. Butcher et al.   JOURNAL OF BACTERIOLOGY

Genome-Wide Identification of Transcriptional Start Sites in the Plant Pathogen Pseudomonas syringae pv. tomato str. DC3000

(2011) Melanie J. Filiatrault et al.   PLoS One

Genetic disassembly and combinatorial reassembly identify a minimal functional repertoire of type III effectors in Pseudomonas syringae

(2011) S. Cunnac et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulation of the co-evolved HrpR and HrpS AAA+ proteins required for Pseudomonas syringae pathogenicity

(2011) Milija Jovanovic et al.   Nature Communications

Dynamic Evolution of Pathogenicity Revealed by Sequencing and Comparative Genomics of 19 Pseudomonas syringae Isolates

(2011) David A. Baltrus et al.   PLoS Pathogens

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Transcriptome Analysis of Pseudomonas syringae Identifies New Genes, Noncoding RNAs, and Antisense Activity

(2010) M. J. Filiatrault et al.   JOURNAL OF BACTERIOLOGY

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Pseudomonas syringae type III secretion system effectors: repertoires in search of functions

(2009) Sébastien Cunnac et al.   CURRENT OPINION IN MICROBIOLOGY

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

GeneTrack--a genomic data processing and visualization framework

(2008) I. Albert et al.   BIOINFORMATICS

Global transcriptional responses of Pseudomonas syringae DC3000 to changes in iron bioavailability in vitro

(2008) Philip A Bronstein et al.   BMC MICROBIOLOGY

Characterization of the PvdS-regulated promoter motif in Pseudomonas syringae pv. tomato DC3000 reveals regulon members and insights regarding PvdS function in other pseudomonads

(2008) Bryan Swingle et al.   MOLECULAR MICROBIOLOGY