Transcriptomic Analysis of Tail Regeneration in the Lizard Anolis carolinensis Reveals Activation of Conserved Vertebrate Developmental and Repair Mechanisms

Genome Wide Expression Profiling during Spinal Cord Regeneration Identifies Comprehensive Cellular Responses in Zebrafish

(2014) Subhra Prakash Hui et al.   PLoS One

Genome reannotation of the lizard Anolis carolinensis based on 14 adult and embryonic deep transcriptomes

(2013) Walter L Eckalbar et al.   BMC GENOMICS

Fundamental Differences in Dedifferentiation and Stem Cell Recruitment during Skeletal Muscle Regeneration in Two Salamander Species

(2013) Tatiana Sandoval-Guzmán et al.   Cell Stem Cell

A large-scale view of the evolution of amniote development: insights from somitogenesis in reptiles

(2013) Kenro Kusumi et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Connective tissue cells, but not muscle cells, are involved in establishing the proximo-distal outcome of limb regeneration in the axolotl

(2013) E. Nacu et al.   DEVELOPMENT

Genetic variation in the green anole lizard (Anolis carolinensis) reveals island refugia and a fragmented Florida during the quaternary

(2013) Marc Tollis et al.   GENETICA

Wnt activation in nail epithelium couples nail growth to digit regeneration

(2013) Makoto Takeo et al.   NATURE

Count-based differential expression analysis of RNA sequencing data using R and Bioconductor

(2013) Simon Anders et al.   Nature Protocols

Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts

(2013) Liang Sun et al.   NUCLEIC ACIDS RESEARCH

Comparative Transcriptional Profiling of the Axolotl Limb Identifies a Tripartite Regeneration-Specific Gene Program

(2013) Dunja Knapp et al.   PLoS One

Numb-deficient satellite cells have regeneration and proliferation defects

(2013) R. M. George et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The zebrafish as a model for complex tissue regeneration

(2013) Matthew Gemberling et al.   TRENDS IN GENETICS

A de novo assembly of the newt transcriptome combined with proteomic validation identifies new protein families expressed during tissue regeneration

(2013) Mario Looso et al.   GENOME BIOLOGY

A Histological Comparison of the Original and Regenerated Tail in the Green Anole,Anolis carolinensis

(2012) Rebecca E. Fisher et al.   Anatomical Record-Advances in Integrative Anatomy and Evolutionary Biology

The Gross Anatomy of the Original and Regenerated Tail in the Green Anole (Anolis carolinensis)

(2012) Terrence B. Ritzman et al.   Anatomical Record-Advances in Integrative Anatomy and Evolutionary Biology

Thrombin Receptor Regulates Hematopoiesis and Endothelial-to-Hematopoietic Transition

(2012) Rui Yue et al.   DEVELOPMENTAL CELL

Characterization of the DNA-binding Properties of the Mohawk Homeobox Transcription Factor

(2012) Douglas M. Anderson et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Differential analysis of gene regulation at transcript resolution with RNA-seq

(2012) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Rfam 11.0: 10 years of RNA families

(2012) Sarah W. Burge et al.   NUCLEIC ACIDS RESEARCH

Interplay of Nkx3.2, Sox9 and Pax3 Regulates Chondrogenic Differentiation of Muscle Progenitor Cells

(2012) Dana M. Cairns et al.   PLoS One

Making skeletal muscle from progenitor and stem cells: development versus regeneration

(2012) Chen-Ming Fan et al.   Wiley Interdisciplinary Reviews-Developmental Biology

Developing a community-based genetic nomenclature for anole lizards

(2011) Kenro Kusumi et al.   BMC GENOMICS

Somitogenesis in the anole lizard and alligator reveals evolutionary convergence and divergence in the amniote segmentation clock

(2011) Walter L. Eckalbar et al.   DEVELOPMENTAL BIOLOGY

Sculpting reproductive circuits: Relationships among hormones, morphology and behavior in anole lizards

(2011) Juli Wade   GENERAL AND COMPARATIVE ENDOCRINOLOGY

The Axolotl Model for Regeneration and Aging Research: A Mini-Review

(2011) Catherine McCusker et al.   GERONTOLOGY

Germ-layer and lineage-restricted stem/progenitors regenerate the mouse digit tip

(2011) Yuval Rinkevich et al.   NATURE

The genome of the green anole lizard and a comparative analysis with birds and mammals

(2011) Jessica Alföldi et al.   NATURE

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Comparative Functional Genomics of the Fission Yeasts

(2011) N. Rhind et al.   SCIENCE

Transient Regenerative Potential of the Neonatal Mouse Heart

(2011) E. R. Porrello et al.   SCIENCE

Efficient regeneration by activation of neurogenesis in homeostatically quiescent regions of the adult vertebrate brain

(2010) D. A. Berg et al.   DEVELOPMENT

Identification of a divergent notch pathway delta ligand in the segmentation clock of the reptile, Anolis carolinensis

(2010) Walter L. Eckalbar et al.   DEVELOPMENTAL BIOLOGY

Wound healing and blastema formation in regenerating digit tips of adult mice

(2010) Warnakulasuriya Akash Fernando et al.   DEVELOPMENTAL BIOLOGY

The FoxO3/type 2 deiodinase pathway is required for normal mouse myogenesis and muscle regeneration

(2010) Monica Dentice et al.   JOURNAL OF CLINICAL INVESTIGATION

Mining online genomic resources in Anolis carolinensis facilitates rapid and inexpensive development of cross-species microsatellite markers for the Anolis lizard genus

(2010) CLAIRE WORDLEY et al.   Molecular Ecology Resources

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

De novo assembly and analysis of RNA-seq data

(2010) Gordon Robertson et al.   NATURE METHODS

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

De novo transcriptome assembly with ABySS

(2009) I. Birol et al.   BIOINFORMATICS

The homeobox gene Mohawk represses transcription by recruiting the sin3A/HDAC co-repressor complex

(2009) Douglas M. Anderson et al.   DEVELOPMENTAL DYNAMICS

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

Reptilian heart development and the molecular basis of cardiac chamber evolution

(2009) Kazuko Koshiba-Takeuchi et al.   NATURE

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Myostatin promotes the terminal differentiation of embryonic muscle progenitors

(2008) M. Manceau et al.   GENES & DEVELOPMENT

Effect of locomotor approach on feeding kinematics in the green anole (Anolis carolinensis)

(2008) Stéphane J. Montuelle et al.   Journal of Experimental Zoology Part A-Ecological Genetics and Physiology

Genome level analysis of rice mRNA 3′-end processing signals and alternative polyadenylation

(2008) Yingjia Shen et al.   NUCLEIC ACIDS RESEARCH

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

A microRNA signature for a BMP2-induced osteoblast lineage commitment program

(2008) Z. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA