A New Supervised Over-Sampling Algorithm with Application to Protein-Nucleotide Binding Residue Prediction
Published 2014 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
A New Supervised Over-Sampling Algorithm with Application to Protein-Nucleotide Binding Residue Prediction
Authors
Keywords
-
Journal
PLoS One
Volume 9, Issue 9, Pages e107676
Publisher
Public Library of Science (PLoS)
Online
2014-09-18
DOI
10.1371/journal.pone.0107676
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Intrinsic Disorder in the BK Channel and Its Interactome
- (2014) Zhenling Peng et al. PLoS One
- High-accuracy prediction of transmembrane inter-helix contacts and application to GPCR 3D structure modeling
- (2013) Jing Yang et al. BIOINFORMATICS
- Protein–ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment
- (2013) Jianyi Yang et al. BIOINFORMATICS
- Prediction of protein-protein interactions from amino acid sequences with ensemble extreme learning machines and principal component analysis
- (2013) Zhu-Hong You et al. BMC BIOINFORMATICS
- Resilience of death: intrinsic disorder in proteins involved in the programmed cell death
- (2013) Z Peng et al. CELL DEATH AND DIFFERENTIATION
- Designing Template-Free Predictor for Targeting Protein-Ligand Binding Sites with Classifier Ensemble and Spatial Clustering
- (2013) Dong-Jun Yu et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- Comprehensively designed consensus of standalone secondary structure predictors improvesQ3by over 3%
- (2013) Jing Yan et al. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
- TargetATPsite: A template-free method for ATP-binding sites prediction with residue evolution image sparse representation and classifier ensemble
- (2013) Dong-Jun Yu et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- In Silico Analysis of Putative Paralytic Shellfish Poisoning Toxins Export Proteins in Cyanobacteria
- (2013) Katia Soto-Liebe et al. PLoS One
- Alignment of Helical Membrane Protein Sequences Using AlignMe
- (2013) Marcus Stamm et al. PLoS One
- Development of RNA Stiffness Parameters and Analysis on Protein-RNA Binding Specificity: Comparison with DNA
- (2012) M. Michael Gromiha Current Bioinformatics
- More than just tails: intrinsic disorder in histone proteins
- (2012) Zhenling Peng et al. Molecular BioSystems
- Improving protein-ATP binding residues prediction by boosting SVMs with random under-sampling
- (2012) Dong-Jun Yu et al. NEUROCOMPUTING
- The distribution of ligand-binding pockets around protein-protein interfaces suggests a general mechanism for pocket formation
- (2012) M. Gao et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- SOMPNN: an efficient non-parametric model for predicting transmembrane helices
- (2011) Dong-Jun Yu et al. AMINO ACIDS
- Prediction and analysis of nucleotide-binding residues using sequence and sequence-derived structural descriptors
- (2011) Ke Chen et al. BIOINFORMATICS
- Residue propensities, discrimination and binding site prediction of adenine and guanine phosphates
- (2011) Ahmad Firoz et al. BMC BIOCHEMISTRY
- SOMRuler: A Novel Interpretable Transmembrane Helices Predictor
- (2011) Dongjun Yu et al. IEEE TRANSACTIONS ON NANOBIOSCIENCE
- Scoring Function Based Approach for Locating Binding Sites and Understanding Recognition Mechanism of Protein−DNA Complexes
- (2011) M. Michael Gromiha et al. Journal of Chemical Information and Modeling
- Ab Initio prediction of protein-ligand binding structures by replica-exchange umbrella sampling simulations
- (2011) Hironori Kokubo et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- ATPsite: sequence-based prediction of ATP-binding residues
- (2011) Ke Chen et al. Proteome Science
- Sequence and structural features of binding site residues in protein-protein complexes: comparison with protein-nucleic acid complexes
- (2011) M Gromiha et al. Proteome Science
- Prediction of GTP interacting residues, dipeptides and tripeptides in a protein from its evolutionary information
- (2010) Jagat S Chauhan et al. BMC BIOINFORMATICS
- ON MULTI-CLASS COST-SENSITIVE LEARNING
- (2010) Zhi-Hua Zhou et al. COMPUTATIONAL INTELLIGENCE
- In Silico Prediction of Binding Sites on Proteins
- (2010) Simon Leis et al. CURRENT MEDICINAL CHEMISTRY
- Understanding and Predicting Druggability. A High-Throughput Method for Detection of Drug Binding Sites
- (2010) Peter Schmidtke et al. JOURNAL OF MEDICINAL CHEMISTRY
- Over-optimism in bioinformatics research
- (2009) A.-L. Boulesteix BIOINFORMATICS
- Identification of ATP binding residues of a protein from its primary sequence
- (2009) Jagat S Chauhan et al. BMC BIOINFORMATICS
- Learning from Imbalanced Data
- (2009) Haibo He et al. IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING
- Boosting support vector machines for imbalanced data sets
- (2009) Benjamin X. Wang et al. KNOWLEDGE AND INFORMATION SYSTEMS
- I-TASSER server for protein 3D structure prediction
- (2008) Yang Zhang BMC BIOINFORMATICS
- Prediction of RNA binding sites in a protein using SVM and PSSM profile
- (2007) Manish Kumar et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now