Prediction and analysis of nucleotide-binding residues using sequence and sequence-derived structural descriptors

Residue propensities, discrimination and binding site prediction of adenine and guanine phosphates

(2011) Ahmad Firoz et al.   BMC BIOCHEMISTRY

Prediction of GTP interacting residues, dipeptides and tripeptides in a protein from its evolutionary information

(2010) Jagat S Chauhan et al.   BMC BIOINFORMATICS

ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids

(2010) H. Ashkenazy et al.   NUCLEIC ACIDS RESEARCH

Identification of ATP binding residues of a protein from its primary sequence

(2009) Jagat S Chauhan et al.   BMC BIOINFORMATICS

Investigation of Atomic Level Patterns in Protein—Small Ligand Interactions

(2009) Ke Chen et al.   PLoS One

Prediction of integral membrane protein type by collocated hydrophobic amino acid pairs

(2008) Ke Chen et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Improving the prediction accuracy of residue solvent accessibility and real-value backbone torsion angles of proteins by guided-learning through a two-layer neural network

(2008) Eshel Faraggi et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS