A Comprehensive Reference Transcriptome Resource for the Common House Spider Parasteatoda tepidariorum

Multi-tissue transcriptomics of the black widow spider reveals expansions, co-options, and functional processes of the silk gland gene toolkit

(2014) Thomas H Clarke et al.   BMC GENOMICS

The Noncoding RNA Revolution—Trashing Old Rules to Forge New Ones

(2014) Thomas R. Cech et al.   CELL

Use of an Activated Beta-Catenin to Identify Wnt Pathway Target Genes in Caenorhabditis elegans , Including a Subset of Collagen Genes Expressed in Late Larval Development

(2014) Belinda M. Jackson et al.   G3-Genes Genomes Genetics

Joint assembly and genetic mapping of the Atlantic horseshoe crab genome reveals ancient whole genome duplication

(2014) Carlos W Nossa et al.   GigaScience

De novo characterization of the gene-rich transcriptomes of two color-polymorphic spiders, Theridion grallator and T. californicum (Araneae: Theridiidae), with special reference to pigment genes

(2013) Peter JP Croucher et al.   BMC GENOMICS

Hematopoiesis and hematopoietic organs in arthropods

(2013) Melina Grigorian et al.   DEVELOPMENT GENES AND EVOLUTION

Developmental Gene Discovery in a Hemimetabolous Insect: De Novo Assembly and Annotation of a Transcriptome for the Cricket Gryllus bimaculatus

(2013) Victor Zeng et al.   PLoS One

De Novo Assembly of the Transcriptome of the Non-Model Plant Streptocarpus rexii Employing a Novel Heuristic to Recover Locus-Specific Transcript Clusters

(2013) Matteo Chiara et al.   PLoS One

The Venom Gland Transcriptome of Latrodectus tredecimguttatus Revealed by Deep Sequencing and cDNA Library Analysis

(2013) Quanze He et al.   PLoS One

Conserved Regulation of Cardiac Calcium Uptake by Peptides Encoded in Small Open Reading Frames

(2013) E. G. Magny et al.   SCIENCE

Spider-Venom Peptides: Structure, Pharmacology, and Potential for Control of Insect Pests

(2012) Glenn F. King et al.   Annual Review of Entomology

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

Evolutionary crossroads in developmental biology: the spider Parasteatoda tepidariorum

(2012) M. Hilbrant et al.   DEVELOPMENT

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Molecular phylogenetics: principles and practice

(2012) Ziheng Yang et al.   NATURE REVIEWS GENETICS

New and continuing developments at PROSITE

(2012) Christian J. A. Sigrist et al.   NUCLEIC ACIDS RESEARCH

Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample

(2012) Chengwei Luo et al.   PLoS One

Large-Scale Transcriptome Analysis of Retroelements in the Migratory Locust, Locusta migratoria

(2012) Feng Jiang et al.   PLoS One

ASGARD: an open-access database of annotated transcriptomes for emerging model arthropod species

(2012) V. Zeng et al.   Database-The Journal of Biological Databases and Curation

Conservation, loss, and redeployment of Wnt ligands in protostomes: implications for understanding the evolution of segment formation

(2011) Ralf Janssen et al.   BMC EVOLUTIONARY BIOLOGY

De novo assembly and characterization of a maternal and developmental transcriptome for the emerging model crustacean Parhyale hawaiensis

(2011) Victor Zeng et al.   BMC GENOMICS

Field guide to next-generation DNA sequencers

(2011) TRAVIS C. GLENN   Molecular Ecology Resources

The genome of Tetranychus urticae reveals herbivorous pest adaptations

(2011) Miodrag Grbić et al.   NATURE

Spinning Gland Transcriptomics from Two Main Clades of Spiders (Order: Araneae) - Insights on Their Molecular, Anatomical and Behavioral Evolution

(2011) Francisco Prosdocimi et al.   PLoS One

Travelling and splitting of a wave of hedgehog expression involved in spider-head segmentation

(2011) Masaki Kanayama et al.   Nature Communications

Quantifying Uncertainty in Estimation of Tropical Arthropod Species Richness

(2010) Andrew J. Hamilton et al.   AMERICAN NATURALIST

Population-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon

(2010) Shawn T O'Neil et al.   BMC GENOMICS

Comprehensive survey of developmental genes in the pea aphid, Acyrthosiphon pisum: frequent lineage-specific duplications and losses of developmental genes

(2010) S. Shigenobu et al.   INSECT MOLECULAR BIOLOGY

Small Peptides Switch the Transcriptional Activity of Shavenbaby During Drosophila Embryogenesis

(2010) T. Kondo et al.   SCIENCE

New Opportunities for an Ancient Material

(2010) F. G. Omenetto et al.   SCIENCE

Intergenic and Repeat Transcription in Human, Chimpanzee and Macaque Brains Measured by RNA-Seq

(2010) Augix Guohua Xu et al.   PLoS Computational Biology

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Analysis of tarantula skeletal muscle protein sequences and identification of transcriptional isoforms

(2009) Jingui Zhu et al.   BMC GENOMICS

The regulated retrotransposon transcriptome of mammalian cells

(2009) Geoffrey J Faulkner et al.   NATURE GENETICS

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

KEGG for representation and analysis of molecular networks involving diseases and drugs

(2009) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Dynamic gene expression is required for anterior regionalization in a spider

(2009) M. Pechmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cupiennius salei andAchaearanea tepidariorum: Spider models for investigating evolution and development

(2008) Alistair P. McGregor et al.   BIOESSAYS

Transcriptome analysis of Loxosceles laeta (Araneae, Sicariidae) spider venomous gland using expressed sequence tags

(2008) Matheus de F Fernandes-Pedrosa et al.   BMC GENOMICS

Hedgehog signaling pathway function conserved in Tribolium segmentation

(2008) Laila Farzana et al.   DEVELOPMENT GENES AND EVOLUTION

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

The genome of the model beetle and pest Tribolium castaneum

(2008) Stephen Richards et al.   NATURE

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH