Large-Scale Transcriptome Analysis of Retroelements in the Migratory Locust, Locusta migratoria

Novel transposable elements from Anopheles gambiae

(2011) Rita D Fernández-Medina et al.   BMC GENOMICS

Polyphenism in Insects

(2011) Stephen J. Simpson et al.   CURRENT BIOLOGY

DNA methylation in insects: on the brink of the epigenomic era

(2011) K. M. Glastad et al.   INSECT MOLECULAR BIOLOGY

Dynamic interactions between transposable elements and their hosts

(2011) Henry L. Levin et al.   NATURE REVIEWS GENETICS

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Expression of Transposable Elements in Neural Tissues during Xenopus Development

(2011) Fernando Faunes et al.   PLoS One

Evidence for Widespread Genomic Methylation in the Migratory Locust, Locusta migratoria (Orthoptera: Acrididae)

(2011) Katie L. Robinson et al.   PLoS One

Modulation of behavioral phase changes of the migratory locust by the catecholamine metabolic pathway

(2011) Z. Ma et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CSP and Takeout Genes Modulate the Switch between Attraction and Repulsion during Behavioral Phase Change in the Migratory Locust

(2011) Wei Guo et al.   PLoS Genetics

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

Generation of microsatellite repeat families by RTE retrotransposons in lepidopteran genomes

(2010) Wee Tay et al.   BMC EVOLUTIONARY BIOLOGY

Genome size evolution in pufferfish: an insight from BAC clone-based Diodon holocanthus genome sequencing

(2010) Baocheng Guo et al.   BMC GENOMICS

LTR retroelements in the genome of Daphnia pulex

(2010) Mina Rho et al.   BMC GENOMICS

Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads

(2010) Jeffrey Martin et al.   BMC GENOMICS

Optimization of de novo transcriptome assembly from next-generation sequencing data

(2010) Y. Surget-Groba et al.   GENOME RESEARCH

Molecular cloning and temporal–spatial expression of I element in gregarious and solitary locusts

(2010) W. Guo et al.   JOURNAL OF INSECT PHYSIOLOGY

Recent Expansion of a New Ingi-Related Clade of Vingi non-LTR Retrotransposons in Hedgehogs

(2010) K. K. Kojima et al.   MOLECULAR BIOLOGY AND EVOLUTION

De novo assembly and analysis of RNA-seq data

(2010) Gordon Robertson et al.   NATURE METHODS

Phenotypic plasticity and diversity in insects

(2010) A. P. Moczek   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

De Novo Analysis of Transcriptome Dynamics in the Migratory Locust during the Development of Phase Traits

(2010) Shuang Chen et al.   PLoS One

Evolutionary dynamics of transposable elements in a small RNA world

(2010) Justin P. Blumenstiel   TRENDS IN GENETICS

Intergenic and Repeat Transcription in Human, Chimpanzee and Macaque Brains Measured by RNA-Seq

(2010) Augix Guohua Xu et al.   PLoS Computational Biology

The role of transposable elements in the evolution of non-mammalian vertebrates and invertebrates

(2010) Noa Sela et al.   GENOME BIOLOGY

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

Non-long terminal repeat (non-LTR) retrotransposons: mechanisms, recent developments, and unanswered questions

(2010) Jeffrey S Han   Mobile DNA

De novo transcriptome assembly with ABySS

(2009) I. Birol et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Identification of novel LTR retrotransposons in the genome of Aedes aegypti

(2009) Crescenzio Francesco Minervini et al.   GENE

Simple and fast classification of non-LTR retrotransposons based on phylogeny of their RT domain protein sequences

(2009) Vladimir V. Kapitonov et al.   GENE

L1 retrotransposition occurs mainly in embryogenesis and creates somatic mosaicism

(2009) H. Kano et al.   GENES & DEVELOPMENT

Tracking the past: Interspersed repeats in an extinct Afrotherian mammal, Mammuthus primigenius

(2009) F. Zhao et al.   GENOME RESEARCH

The Evolutionary Dynamics of Autonomous Non-LTR Retrotransposons in the Lizard Anolis Carolinensis Shows More Similarity to Fish Than Mammals

(2009) P. A. Novick et al.   MOLECULAR BIOLOGY AND EVOLUTION

The regulated retrotransposon transcriptome of mammalian cells

(2009) Geoffrey J Faulkner et al.   NATURE GENETICS

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

The impact of retrotransposons on human genome evolution

(2009) Richard Cordaux et al.   NATURE REVIEWS GENETICS

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants

(2009) J. S. Hawkins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterization and comparative profiling of the small RNA transcriptomes in two phases of locust

(2009) Yuanyuan Wei et al.   GENOME BIOLOGY

Regulation of mammalian gene expression by retroelements and non-coding tandem repeats

(2008) Nikolai V. Tomilin   BIOESSAYS

Transposable elements and the evolution of regulatory networks

(2008) Cédric Feschotte   NATURE REVIEWS GENETICS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Maize Genome Structure Variation: Interplay between Retrotransposon Polymorphisms and Genic Recombination

(2008) H. K. Dooner et al.   PLANT CELL

A Retrotransposon-Mediated Gene Duplication Underlies Morphological Variation of Tomato Fruit

(2008) H. Xiao et al.   SCIENCE

Analysis of repetitive DNA distribution patterns in the Tribolium castaneum genome

(2008) Suzhi Wang et al.   GENOME BIOLOGY