Evaluation of Protein Dihedral Angle Prediction Methods

Template-based protein structure modeling using the RaptorX web server

(2012) Morten Källberg et al.   Nature Protocols

TANGLE: Two-Level Support Vector Regression Approach for Protein Backbone Torsion Angle Prediction from Primary Sequences

(2012) Jiangning Song et al.   PLoS One

Structural Protein Descriptors in 1-Dimension and their Sequence-Based Predictions

(2011) Lukasz Kurgan et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

SPINE X: Improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles

(2011) Eshel Faraggi et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

ccPDB: compilation and creation of data sets from Protein Data Bank

(2011) H. Singh et al.   NUCLEIC ACIDS RESEARCH

Predicting beta-turns and their types using predicted backbone dihedral angles and secondary structures

(2010) Petros Kountouris et al.   BMC BIOINFORMATICS

I-TASSER: a unified platform for automated protein structure and function prediction

(2010) Ambrish Roy et al.   Nature Protocols

NetTurnP – Neural Network Prediction of Beta-turns by Use of Evolutionary Information and Predicted Protein Sequence Features

(2010) Bent Petersen et al.   PLoS One

Prediction of β-Hairpins in Proteins Using Physicochemical Properties and Structure Information

(2010) Jun-Feng Xia et al.   PROTEIN AND PEPTIDE LETTERS

Fast and accurate automatic structure prediction with HHpred

(2009) Andrea Hildebrand et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Predicting Continuous Local Structure and the Effect of Its Substitution for Secondary Structure in Fragment-Free Protein Structure Prediction

(2009) Eshel Faraggi et al.   STRUCTURE

Prediction of beta-turns at over 80% accuracy based on an ensemble of predicted secondary structures and multiple alignments

(2008) Ce Zheng et al.   BMC BIOINFORMATICS

The Jpred 3 secondary structure prediction server

(2008) C. Cole et al.   NUCLEIC ACIDS RESEARCH

SP5: Improving Protein Fold Recognition by Using Torsion Angle Profiles and Profile-Based Gap Penalty Model

(2008) Wei Zhang et al.   PLoS One

ANGLOR: A Composite Machine-Learning Algorithm for Protein Backbone Torsion Angle Prediction

(2008) Sitao Wu et al.   PLoS One

Real-value prediction of backbone torsion angles

(2008) Bin Xue et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Improving the prediction accuracy of residue solvent accessibility and real-value backbone torsion angles of proteins by guided-learning through a two-layer neural network

(2008) Eshel Faraggi et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

TALI: LOCAL ALIGNMENT OF PROTEIN STRUCTURES USING BACKBONE TORSION ANGLES

(2008) XIJIANG MIAO et al.   Journal of Bioinformatics and Computational Biology