TANGLE: Two-Level Support Vector Regression Approach for Protein Backbone Torsion Angle Prediction from Primary Sequences

Critical assessment of high-throughput standalone methods for secondary structure prediction

(2011) H. Zhang et al.   BRIEFINGS IN BIOINFORMATICS

Structural Protein Descriptors in 1-Dimension and their Sequence-Based Predictions

(2011) Lukasz Kurgan et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

iFC2: an integrated web-server for improved prediction of protein structural class, fold type, and secondary structure content

(2010) Ke Chen et al.   AMINO ACIDS

DomSVR: domain boundary prediction with support vector regression from sequence information alone

(2010) Peng Chen et al.   AMINO ACIDS

Multilevel support vector regression analysis to identify condition-specific regulatory networks

(2010) Li Chen et al.   BIOINFORMATICS

Cascleave: towards more accurate prediction of caspase substrate cleavage sites

(2010) Jiangning Song et al.   BIOINFORMATICS

Prediction of GTP interacting residues, dipeptides and tripeptides in a protein from its evolutionary information

(2010) Jagat S Chauhan et al.   BMC BIOINFORMATICS

Integrated prediction of one-dimensional structural features and their relationships with conformational flexibility in helical membrane proteins

(2010) Shandar Ahmad et al.   BMC BIOINFORMATICS

Predicting beta-turns and their types using predicted backbone dihedral angles and secondary structures

(2010) Petros Kountouris et al.   BMC BIOINFORMATICS

EPSVR and EPMeta: prediction of antigenic epitopes using support vector regression and multiple server results

(2010) Shide Liang et al.   BMC BIOINFORMATICS

Musite, a Tool for Global Prediction of General and Kinase-specific Phosphorylation Sites

(2010) Jianjiong Gao et al.   MOLECULAR & CELLULAR PROTEOMICS

Fluctuations of backbone torsion angles obtained from NMR-determined structures and their prediction

(2010) Tuo Zhang et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Improved identification of outer membrane beta barrel proteins using primary sequence, predicted secondary structure, and evolutionary information

(2010) Marcin J. Mizianty et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

A new regularized least squares support vector regression for gene selection

(2009) Pei-Chun Chen et al.   BMC BIOINFORMATICS

Predicting dihedral angle probability distributions for protein coil residues from primary sequence using neural networks

(2009) Glennie Helles et al.   BMC BIOINFORMATICS

Prediction of backbone dihedral angles and protein secondary structure using support vector machines

(2009) Petros Kountouris et al.   BMC BIOINFORMATICS

A Framework for Multiple Kernel Support Vector Regression and Its Applications to siRNA Efficacy Prediction

(2009) Shibin Qiu et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Improved Disorder Prediction by Combination of Orthogonal Approaches

(2009) Avner Schlessinger et al.   PLoS One

Prodepth: Predict Residue Depth by Support Vector Regression Approach from Protein Sequences Only

(2009) Jiangning Song et al.   PLoS One

Robust Prediction of B-Factor Profile from Sequence Using Two-Stage SVR Based on Random Forest Feature Selection

(2009) Xiao-Yong Pan et al.   PROTEIN AND PEPTIDE LETTERS

Predicting Continuous Local Structure and the Effect of Its Substitution for Secondary Structure in Fragment-Free Protein Structure Prediction

(2009) Eshel Faraggi et al.   STRUCTURE

HSEpred: predict half-sphere exposure from protein sequences

(2008) Jiangning Song et al.   BIOINFORMATICS

Accurate sequence-based prediction of catalytic residues

(2008) Tuo Zhang et al.   BIOINFORMATICS

Sequence based residue depth prediction using evolutionary information and predicted secondary structure

(2008) Hua Zhang et al.   BMC BIOINFORMATICS

Prediction of beta-turns at over 80% accuracy based on an ensemble of predicted secondary structures and multiple alignments

(2008) Ce Zheng et al.   BMC BIOINFORMATICS

Identification of Proteins Secreted by Malaria Parasite into Erythrocyte using SVM and PSSM profiles

(2008) Ruchi Verma et al.   BMC BIOINFORMATICS

SP5: Improving Protein Fold Recognition by Using Torsion Angle Profiles and Profile-Based Gap Penalty Model

(2008) Wei Zhang et al.   PLoS One

CyclinPred: A SVM-Based Method for Predicting Cyclin Protein Sequences

(2008) Mridul K. Kalita et al.   PLoS One

ANGLOR: A Composite Machine-Learning Algorithm for Protein Backbone Torsion Angle Prediction

(2008) Sitao Wu et al.   PLoS One

Real-value prediction of backbone torsion angles

(2008) Bin Xue et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

MUSTER: Improving protein sequence profile-profile alignments by using multiple sources of structure information

(2008) Sitao Wu et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Improving the prediction accuracy of residue solvent accessibility and real-value backbone torsion angles of proteins by guided-learning through a two-layer neural network

(2008) Eshel Faraggi et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Tight Regulation of Unstructured Proteins: From Transcript Synthesis to Protein Degradation

(2008) J. Gsponer et al.   SCIENCE

TALI: LOCAL ALIGNMENT OF PROTEIN STRUCTURES USING BACKBONE TORSION ANGLES

(2008) XIJIANG MIAO et al.   Journal of Bioinformatics and Computational Biology