Evaluation of model quality predictions in CASP9

Fast Geometric Consensus Approach for Protein Model Quality Assessment

(2011) Rafal Adamczak et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

The IntFOLD server: an integrated web resource for protein fold recognition, 3D model quality assessment, intrinsic disorder prediction, domain prediction and ligand binding site prediction

(2011) D. B. Roche et al.   NUCLEIC ACIDS RESEARCH

CASP9 target classification

(2011) Lisa N. Kinch et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

CASP9 results compared to those of previous casp experiments

(2011) Andriy Kryshtafovych et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Quality assessment of protein model-structures using evolutionary conservation

(2010) Matan Kalman et al.   BIOINFORMATICS

Advances in the Structure-Based Design of the Influenza A Neuraminidase Inhibitors

(2010) Petar Mitrasinovic   CURRENT DRUG TARGETS

Protein Kinases: Docking and Homology Modeling Reliability

(2010) Tiziano Tuccinardi et al.   Journal of Chemical Information and Modeling

Comprehensive Structural and Functional Characterization of the Human Kinome by Protein Structure Modeling and Ligand Virtual Screening

(2010) Michal Brylinski et al.   Journal of Chemical Information and Modeling

Molecular Modeling on Inhibitor Complexes and Active-Site Dynamics of Cytochrome P450 C17, a Target for Prostate Cancer Therapy

(2010) Shozeb M. Haider et al.   JOURNAL OF MOLECULAR BIOLOGY

Docking-based virtual screening for ligands of G protein-coupled receptors: Not only crystal structures but also in silico models

(2010) Santiago Vilar et al.   JOURNAL OF MOLECULAR GRAPHICS & MODELLING

ModBase, a database of annotated comparative protein structure models, and associated resources

(2010) U. Pieper et al.   NUCLEIC ACIDS RESEARCH

Designing Inhibitors of M2 Proton Channel against H1N1 Swine Influenza Virus

(2010) Qi-Shi Du et al.   PLoS One

Essential roles for imuA'- and imuB-encoded accessory factors in DnaE2-dependent mutagenesis in Mycobacterium tuberculosis

(2010) D. F. Warner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structure-based modeling of the functional HIV-1 intasome and its inhibition

(2010) L. Krishnan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sub-AQUA: real-value quality assessment of protein structure models

(2010) Yifeng David Yang et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Rapid model quality assessment for protein structure predictions using the comparison of multiple models without structural alignments

(2009) L. J. McGuffin et al.   BIOINFORMATICS

Protein structure prediction and model quality assessment

(2009) Andriy Kryshtafovych et al.   DRUG DISCOVERY TODAY

QMEAN server for protein model quality estimation

(2009) Pascal Benkert et al.   NUCLEIC ACIDS RESEARCH

Prediction of global and local quality of CASP8 models by MULTICOM series

(2009) Jianlin Cheng et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Prediction of global and local model quality in CASP8 using the ModFOLD server

(2009) Liam J. McGuffin   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Evaluation of CASP8 model quality predictions

(2009) Domenico Cozzetto et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Global and local model quality estimation at CASP8 using the scoring functions QMEAN and QMEANclust

(2009) Pascal Benkert et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of global and local model quality in CASP8 using Pcons and ProQ

(2009) Per Larsson et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Outcome of a Workshop on Applications of Protein Models in Biomedical Research

(2009) Torsten Schwede et al.   STRUCTURE

MetaMQAP: A meta-server for the quality assessment of protein models

(2008) Marcin Pawlowski et al.   BMC BIOINFORMATICS

The SWISS-MODEL Repository and associated resources

(2008) F. Kiefer et al.   NUCLEIC ACIDS RESEARCH

Using multiple templates to improve quality of homology models in automated homology modeling

(2008) Per Larsson et al.   PROTEIN SCIENCE

In silico study of the human rhodopsin and meta rhodopsin II/S-arrestin complexes: Impact of single point mutations related to retina degenerative diseases

(2008) Leonardo Mokarzel-Falcón et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Evaluating the absolute quality of a single protein model using structural features and support vector machines

(2008) Zheng Wang et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Comparative Modeling in Structural Genomics

(2008) John Moult   STRUCTURE

Distantly related lipocalins share two conserved clusters of hydrophobic residues: use in homology modeling

(2008) Benoit Adam et al.   BMC STRUCTURAL BIOLOGY

QMEAN: A comprehensive scoring function for model quality assessment

(2007) Pascal Benkert et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Pcons: A neural-network-based consensus predictor that improves fold recognition

(2002) Jesper Lundström et al.   PROTEIN SCIENCE