The “Grep” Command But Not FusionMap, FusionFinder or ChimeraScan Captures the CIC-DUX4 Fusion Gene from Whole Transcriptome Sequencing Data on a Small Round Cell Tumor with t(4;19)(q35;q13)

Undifferentiated Small Round Cell Sarcoma With t(4;19)(q35;q13.1) CIC-DUX4 Fusion

(2013) Eun-Young Karen Choi et al.   AMERICAN JOURNAL OF SURGICAL PATHOLOGY

State of art fusion-finder algorithms are suitable to detect transcription-induced chimeras in normal tissues?

(2013) Matteo Carrara et al.   BMC BIOINFORMATICS

CD99-positive undifferentiated round cell sarcoma diagnosed on fine needle aspiration cytology, later found to harbour aCIC-DUX4translocation: a recently described entity

(2013) B. Kajtár et al.   CYTOPATHOLOGY

RNA sequencing identifies fusion of theEWSR1andYY1genes in mesothelioma with t(14;22)(q32;q12)

(2013) Ioannis Panagopoulos et al.   GENES CHROMOSOMES & CANCER

Superficial EWSR1-negative undifferentiated small round cell sarcoma with CIC/DUX4 gene fusion: a new variant of Ewing-like tumors with locoregional lymph node metastasis

(2013) Isidro Machado et al.   VIRCHOWS ARCHIV

State-of-the-Art Fusion-Finder Algorithms Sensitivity and Specificity

(2013) Matteo Carrara et al.   Biomed Research International

Application of next generation sequencing to human gene fusion detection: computational tools, features and perspectives

(2012) Q. Wang et al.   BRIEFINGS IN BIOINFORMATICS

FusionFinder: A Software Tool to Identify Expressed Gene Fusion Candidates from RNA-Seq Data

(2012) Richard W. Francis et al.   PLoS One

Whole-Transcriptome Sequencing Identifies Novel IRF2BP2-CDX1 Fusion Gene Brought about by Translocation t(1;5)(q42;q32) in Mesenchymal Chondrosarcoma

(2012) Kaja B. Nyquist et al.   PLoS One

FusionMap: detecting fusion genes from next-generation sequencing data at base-pair resolution

(2011) Huanying Ge et al.   BIOINFORMATICS

ChimeraScan: a tool for identifying chimeric transcription in sequencing data

(2011) Matthew K. Iyer et al.   BIOINFORMATICS

High prevalence of CIC fusion with double-homeobox (DUX4) transcription factors in EWSR1-negative undifferentiated small blue round cell sarcomas

(2011) Antoine Italiano et al.   GENES CHROMOSOMES & CANCER

The CIC-DUX4 fusion transcript is present in a subgroup of pediatric primitive round cell sarcomas

(2011) Cassandra Graham et al.   HUMAN PATHOLOGY

Detailed cytogenetic and array analysis of pediatric primitive sarcomas reveals a recurrent CIC–DUX4 fusion gene event

(2009) Maisa Yoshimoto et al.   CANCER GENETICS AND CYTOGENETICS

Translocation (4;19)(q35;q13.1)–Associated Primitive round Cell Sarcoma: Report of a Case and Review of the Literature

(2008) Dinesh Rakheja et al.   PEDIATRIC AND DEVELOPMENTAL PATHOLOGY