RNABindRPlus: A Predictor that Combines Machine Learning and Sequence Homology-Based Methods to Improve the Reliability of Predicted RNA-Binding Residues in Proteins

Dissecting the expression landscape of RNA-binding proteins in human cancers

(2014) Bobak Kechavarzi et al.   GENOME BIOLOGY

Long noncoding RNAs and the genetics of cancer

(2013) S W Cheetham et al.   BRITISH JOURNAL OF CANCER

miRNAs and long noncoding RNAs as biomarkers in human diseases

(2013) Katrien Van Roosbroeck et al.   EXPERT REVIEW OF MOLECULAR DIAGNOSTICS

DockRank: Ranking docked conformations using partner-specific sequence homology-based protein interface prediction

(2013) Li C. Xue et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

A Virological View of Innate Immune Recognition

(2012) Akiko Iwasaki   Annual Review of Microbiology

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Predicting protein-protein interface residues using local surface structural similarity

(2012) Rafael A Jordan et al.   BMC BIOINFORMATICS

Protein-RNA interface residue prediction using machine learning: an assessment of the state of the art

(2012) Rasna R Walia et al.   BMC BIOINFORMATICS

Decoding the non-coding RNAs in Alzheimer’s disease

(2012) Nicole Schonrock et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Non-coding RNAs in Alzheimer's Disease

(2012) Lin Tan et al.   MOLECULAR NEUROBIOLOGY

Molecular mechanisms of viral inhibitors of RIG-I-like receptors

(2012) Daisy W. Leung et al.   TRENDS IN MICROBIOLOGY

HomPPI: a class of sequence homology based protein-protein interface prediction methods

(2011) Li C Xue et al.   BMC BIOINFORMATICS

Long Intergenic Noncoding RNAs: New Links in Cancer Progression

(2011) M.-C. Tsai et al.   CANCER RESEARCH

Computational methods for prediction of protein–RNA interactions

(2011) Tomasz Puton et al.   JOURNAL OF STRUCTURAL BIOLOGY

Non-coding RNAs in human disease

(2011) Manel Esteller   NATURE REVIEWS GENETICS

PredUs: a web server for predicting protein interfaces using structural neighbors

(2011) Q. C. Zhang et al.   NUCLEIC ACIDS RESEARCH

RNA–protein interactions in human health and disease

(2011) Ahmad M. Khalil et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Protein-Protein Complex Structure Predictions by Multimeric Threading and Template Recombination

(2011) Srayanta Mukherjee et al.   STRUCTURE

Identification of RNA-binding sites in proteins by integrating various sequence information

(2010) Cui-cui Wang et al.   AMINO ACIDS

ProBiS algorithm for detection of structurally similar protein binding sites by local structural alignment

(2010) Janez Konc et al.   BIOINFORMATICS

BindN+ for accurate prediction of DNA and RNA-binding residues from protein sequence features

(2010) Liangjiang Wang et al.   BMC Systems Biology

Large non-coding RNAs: missing links in cancer?

(2010) M. Huarte et al.   HUMAN MOLECULAR GENETICS

Struct-NB: predicting protein-RNA binding sites using structural features

(2010) Fadi Towfic et al.   International Journal of Data Mining and Bioinformatics

Structural and functional insights into 5′-ppp RNA pattern recognition by the innate immune receptor RIG-I

(2010) Yanli Wang et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

PiRaNhA: a server for the computational prediction of RNA-binding residues in protein sequences

(2010) Y. Murakami et al.   NUCLEIC ACIDS RESEARCH

Structure-based prediction of RNA-binding domains and RNA-binding sites and application to structural genomics targets

(2010) H. Zhao et al.   NUCLEIC ACIDS RESEARCH

NAPS: a residue-level nucleic acid-binding prediction server

(2010) Matthew B. Carson et al.   NUCLEIC ACIDS RESEARCH

PRIDB: a protein-RNA interface database

(2010) B. A. Lewis et al.   NUCLEIC ACIDS RESEARCH

Protein interface conservation across structure space

(2010) Q. C. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Prediction of RNA-binding residues in proteins from primary sequence using an enriched random forest model with a novel hybrid feature

(2010) Xin Ma et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

LIBRUS: combined machine learning and homology information for sequence-based ligand-binding residue prediction

(2009) C. Kauffman et al.   BIOINFORMATICS

Protein function annotation from sequence: prediction of residues interacting with RNA

(2009) R. V. Spriggs et al.   BIOINFORMATICS

Exploiting structural and topological information to improve prediction of RNA-protein binding sites

(2009) Stefan R Maetschke et al.   BMC BIOINFORMATICS

RNA-binding residues in sequence space: Conservation and interaction patterns

(2009) Ruth V. Spriggs et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Optimal protein-RNA area, OPRA: A propensity-based method to identify RNA-binding sites on proteins

(2009) Laura Pérez-Cano et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

High-throughput assays probing protein–RNA interactions of eukaryotic translation initiation factors

(2008) Gabriela Galicia-Vázquez et al.   ANALYTICAL BIOCHEMISTRY

Predicting RNA-binding sites of proteins using support vector machines and evolutionary information

(2008) Cheng-Wei Cheng et al.   BMC BIOINFORMATICS

Counting, coordinating and controlling the alternatives

(2008) Mary Muers   NATURE REVIEWS GENETICS

Seeking Membranes: Positive-Strand RNA Virus Replication Complexes

(2008) Mark R Denison   PLOS BIOLOGY

Prediction of RNA binding sites in a protein using SVM and PSSM profile

(2007) Manish Kumar et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS