Estimating the Timing of Mother-to-Child Transmission of the Human Immunodeficiency Virus Type 1 Using a Viral Molecular Evolution Model

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Time-measured phylogenies of gag, pol and env sequence data reveal the direction and time interval of HIV-1 transmission

(2011) Andrea Rachinger et al.   AIDS

Dates of HIV infection can be estimated for seroprevalent patients by coalescent analysis of serial next-generation sequencing data

(2011) Art F.Y. Poon et al.   AIDS

The Genetic Bottleneck in Vertical Transmission of Subtype C HIV-1 Is Not Driven by Selection of Especially Neutralization-Resistant Virus from the Maternal Viral Population

(2011) E. S. Russell et al.   JOURNAL OF VIROLOGY

The evolution of HIV: Inferences using phylogenetics

(2011) Eduardo Castro-Nallar et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Reviewing the History of HIV-1: Spread of Subtype B in the Americas

(2011) Dennis Maletich Junqueira et al.   PLoS One

Phylogenetic analysis consistent with a clinical history of sexual transmission of HIV-1 from a single donor reveals transmission of highly distinct variants

(2011) Suzanne English et al.   Retrovirology

Genotypic and functional properties of early infant HIV-1 envelopes

(2011) Michael Kishko et al.   Retrovirology

Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology

(2010) W. Delport et al.   BIOINFORMATICS

Absence of HIV‐1 Superinfection 1 Year after Infection between 1985 and 1997 Coincides with a Reduction in Sexual Risk Behavior in the Seroincident Amsterdam Cohort of Homosexual Men

(2010) Andrea Rachinger et al.   CLINICAL INFECTIOUS DISEASES

Restricted Genetic Diversity of HIV-1 Subtype C Envelope Glycoprotein from Perinatally Infected Zambian Infants

(2010) Hong Zhang et al.   PLoS One

Comparison of Bayesian and Maximum-Likelihood Phylogenetic Approaches in Two Legal Cases Involving Accusations of Transmission of HIV

(2009) Matthew Kaye et al.   AIDS RESEARCH AND HUMAN RETROVIRUSES

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

Modeling sequence evolution in acute HIV-1 infection

(2009) Ha Youn Lee et al.   JOURNAL OF THEORETICAL BIOLOGY

Molecular Phylodynamics of the Heterosexual HIV Epidemic in the United Kingdom

(2009) Gareth J. Hughes et al.   PLoS Pathogens

The molecular epidemiology of HIV-1 envelope diversity during HIV-1 subtype C vertical transmission in Malawian mother???infant pairs

(2008) Jesse J Kwiek et al.   AIDS

Bayesian inference of population size history from multiple loci

(2008) Joseph Heled et al.   BMC EVOLUTIONARY BIOLOGY

Viral reservoirs, residual viremia, and the potential of highly active antiretroviral therapy to eradicate HIV infection

(2008) Lin Shen et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Characteristics of HIV Type 1 (HIV‐1) Glycoprotein 120envSequences in Mother‐Infant Pairs Infected with HIV‐1 Subtype CRF01_AE

(2008) Tanawan Samleerat et al.   JOURNAL OF INFECTIOUS DISEASES

Direct evidence of extensive diversity of HIV-1 in Kinshasa by 1960

(2008) Michael Worobey et al.   NATURE

Episodic Sexual Transmission of HIV Revealed by Molecular Phylodynamics

(2008) Fraser Lewis et al.   PLOS MEDICINE