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Ambiguous Nucleotide Calls From Population-based Sequencing of HIV-1 are a Marker for Viral Diversity and the Age of Infection

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Improved Detection of CXCR4-Using HIV by V3 Genotyping: Application of Population-Based and “Deep” Sequencing to Plasma RNA and Proviral DNA

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Transmission of Single HIV-1 Genomes and Dynamics of Early Immune Escape Revealed by Ultra-Deep Sequencing

(2010) Will Fischer et al.   PLoS One

Parallel tagged sequencing on the 454 platform

(2008) Matthias Meyer et al.   Nature Protocols

A joint back calculation model for the imputation of the date of HIV infection in a prevalent cohort

(2008) Patrick Taffé et al.   STATISTICS IN MEDICINE